Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30525
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   5e-17
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 37/52 (71%), Positives = 46/52 (88%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQ 52



 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 402 SDDDMGFGLFD 434
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 402 SDDDMGFGLFD 434
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +3

Query: 6   LVSSFLFVVRTQTCLFSLELRPTATCTFKTKN-----GVKS*ISMCLLC 137
           LVSS L  +R   CL ++ ++ +ATC    +N     G +    +C LC
Sbjct: 238 LVSSSLLSLRGAHCLVTVAVKRSATCATNVQNRCTLHGDRGGQELCYLC 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,761
Number of Sequences: 59808
Number of extensions: 209920
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)