Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30525
         (544 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    96   2e-20
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    96   2e-20
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    96   2e-20
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    94   1e-19
AY118407-1|AAM48436.1|  282|Drosophila melanogaster RE62293p pro...    28   7.2  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 45/52 (86%), Positives = 50/52 (96%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALE 52



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 29/64 (45%)
 Frame = +3

Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422
           ++L GINV+DLITNIGSGV                                  SDDDMGF
Sbjct: 49  KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 423 GLFD 434
           GLFD
Sbjct: 109 GLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 45/52 (86%), Positives = 50/52 (96%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALE 52



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 29/64 (45%)
 Frame = +3

Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422
           ++L GINV+DLITNIGSGV                                  SDDDMGF
Sbjct: 49  KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 423 GLFD 434
           GLFD
Sbjct: 109 GLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 45/52 (86%), Positives = 50/52 (96%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALE 52



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 29/64 (45%)
 Frame = +3

Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422
           ++L GINV+DLITNIGSGV                                  SDDDMGF
Sbjct: 49  KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 423 GLFD 434
           GLFD
Sbjct: 109 GLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 45/53 (84%), Positives = 50/53 (94%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEA 258
           M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEA
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEA 53



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/64 (39%), Positives = 28/64 (43%)
 Frame = +3

Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422
           ++L  INV+DLITNIGSGV                                  SDDDMGF
Sbjct: 49  KALEAINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 423 GLFD 434
           GLFD
Sbjct: 109 GLFD 112


>AY118407-1|AAM48436.1|  282|Drosophila melanogaster RE62293p
           protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 266 DIDASKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRA 135
           D+++ + +    G+  STS+AA F    +   +T+T  STR  A
Sbjct: 175 DLESQRRVTTEEGRNLSTSSAARFLRHRLHCVITSTRHSTRWSA 218


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,533,343
Number of Sequences: 53049
Number of extensions: 345681
Number of successful extensions: 939
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)