BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30525 (544 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosom... 96 2e-20 AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p pro... 96 2e-20 AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA ... 96 2e-20 Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein ( Dros... 94 1e-19 AY118407-1|AAM48436.1| 282|Drosophila melanogaster RE62293p pro... 28 7.2 >S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosomal protein rpA2 protein. Length = 112 Score = 96.3 bits (229), Expect = 2e-20 Identities = 45/52 (86%), Positives = 50/52 (96%) Frame = +1 Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255 M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALE 52 Score = 45.2 bits (102), Expect = 6e-05 Identities = 26/64 (40%), Positives = 29/64 (45%) Frame = +3 Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422 ++L GINV+DLITNIGSGV SDDDMGF Sbjct: 49 KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108 Query: 423 GLFD 434 GLFD Sbjct: 109 GLFD 112 >AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p protein. Length = 112 Score = 96.3 bits (229), Expect = 2e-20 Identities = 45/52 (86%), Positives = 50/52 (96%) Frame = +1 Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255 M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALE 52 Score = 45.2 bits (102), Expect = 6e-05 Identities = 26/64 (40%), Positives = 29/64 (45%) Frame = +3 Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422 ++L GINV+DLITNIGSGV SDDDMGF Sbjct: 49 KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108 Query: 423 GLFD 434 GLFD Sbjct: 109 GLFD 112 >AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA protein. Length = 112 Score = 96.3 bits (229), Expect = 2e-20 Identities = 45/52 (86%), Positives = 50/52 (96%) Frame = +1 Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255 M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALE 52 Score = 45.2 bits (102), Expect = 6e-05 Identities = 26/64 (40%), Positives = 29/64 (45%) Frame = +3 Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422 ++L GINV+DLITNIGSGV SDDDMGF Sbjct: 49 KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108 Query: 423 GLFD 434 GLFD Sbjct: 109 GLFD 112 >Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein ( Drosophila melanogastermRNA for A-type ribosomal protein rp21C. ). Length = 112 Score = 93.9 bits (223), Expect = 1e-19 Identities = 45/53 (84%), Positives = 50/53 (94%) Frame = +1 Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEA 258 M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEA Sbjct: 1 MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEA 53 Score = 42.7 bits (96), Expect = 3e-04 Identities = 25/64 (39%), Positives = 28/64 (43%) Frame = +3 Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422 ++L INV+DLITNIGSGV SDDDMGF Sbjct: 49 KALEAINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108 Query: 423 GLFD 434 GLFD Sbjct: 109 GLFD 112 >AY118407-1|AAM48436.1| 282|Drosophila melanogaster RE62293p protein. Length = 282 Score = 28.3 bits (60), Expect = 7.2 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 266 DIDASKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRA 135 D+++ + + G+ STS+AA F + +T+T STR A Sbjct: 175 DLESQRRVTTEEGRNLSTSSAARFLRHRLHCVITSTRHSTRWSA 218 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,533,343 Number of Sequences: 53049 Number of extensions: 345681 Number of successful extensions: 939 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 934 length of database: 24,988,368 effective HSP length: 80 effective length of database: 20,744,448 effective search space used: 2074444800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -