Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30525
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 88 3e-18
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 85 4e-17
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 2.9
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 28 3.8
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 6.6
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 88.2 bits (209), Expect = 3e-18
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +1
Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALE
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALE 52
Score = 30.3 bits (65), Expect = 0.94
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422
++L G++V++LIT++ SG SDDDMGF
Sbjct: 49 KALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEE-SDDDMGF 107
Query: 423 GLFD 434
GLFD
Sbjct: 108 GLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 84.6 bits (200), Expect = 4e-17
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = +1
Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALE
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALE 52
Score = 30.3 bits (65), Expect = 0.94
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 243 QSLGGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 422
++L G++V++LIT++ SG SDDDMGF
Sbjct: 49 KALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEE-SDDDMGF 107
Query: 423 GLFD 434
GLFD
Sbjct: 108 GLFD 111
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 88 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 225
S KM+ K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 34 SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 402 SDDDMGFGLFD 434
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 402 SDDDMGFGLFD 434
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 402 SDDDMGFGLFD 434
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 118 IQLLTPFLVLNVQV--AVGLSSRENKHV*VLTTKRKLE 11
IQ +TPFLVL + V A L R H+ + T R+LE
Sbjct: 300 IQCVTPFLVLGIGVDDAFILLHRWKHHIAITDTPRRLE 337
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 203 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 93
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 203 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 93
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,341,423
Number of Sequences: 27780
Number of extensions: 163839
Number of successful extensions: 410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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