Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30525
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     65   3e-11
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    64   4e-11
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    64   4e-11
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    64   8e-11
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    64   8e-11
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       63   1e-10
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.004
At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ...    29   2.7  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    28   4.6  
At2g47540.1 68415.m05933 pollen Ole e 1 allergen and extensin fa...    27   8.1  

>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = +1

Query: 103 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           +S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCE 51


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 27/52 (51%), Positives = 39/52 (75%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAE 52


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 27/52 (51%), Positives = 39/52 (75%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAE 52


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 27/52 (51%), Positives = 38/52 (73%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAE 52



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = +3

Query: 261 NVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 434
           NV DLI N+G+G                                   SD D+GFGLFD
Sbjct: 55  NVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 27/52 (51%), Positives = 38/52 (73%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAE 52



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = +3

Query: 261 NVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 434
           NV DLI N+G+G                                   SD D+GFGLFD
Sbjct: 55  NVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 27/52 (51%), Positives = 38/52 (73%)
 Frame = +1

Query: 100 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAE 52


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +1

Query: 103 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 237
           ++  ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 1   MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 462

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 287 DVGDQVTDIDASKALANRPGQYGSTST 207
           DVG+  T    ++ L  +PGQ+GS+S+
Sbjct: 124 DVGNSATPNSETRLLTRKPGQHGSSSS 150


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 251 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 144
           +  +N P  + S  TAA  KM +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


>At2g47540.1 68415.m05933 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 173

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 9   VSSFLFVVRTQTCLFSLELRPTATCTFKTK 98
           V  +  V++ + C   LEL P+ TC+F T+
Sbjct: 98  VKDYKKVIKIKECRAFLELSPSDTCSFPTE 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,885,149
Number of Sequences: 28952
Number of extensions: 160349
Number of successful extensions: 383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)