Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30523
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    78   1e-15
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    28   0.96 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.1  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   6.8  
SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces p...    25   9.0  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.0  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 40/85 (47%), Positives = 56/85 (65%)
 Frame = +1

Query: 253 SDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILG 432
           +++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL 
Sbjct: 66  NNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILA 123

Query: 433 RFKELQFFTGESMDCDGMVAMMEYR 507
            FK+  F+ GESMD D MV +M YR
Sbjct: 124 NFKDYDFYIGESMDPDAMVVLMNYR 148



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +2

Query: 59  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 235
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 236 SAVES 250
              E+
Sbjct: 60  EGTET 64



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 528 PIMMFFKHGLEEEKF 572
           P M+FFK GL  EKF
Sbjct: 154 PYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 256 DIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 399
           D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 90  DEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 613 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVP 515
           AS ELL+       NFS+ R CL+N ++  CVP
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVP 812


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 96   ISSPVIMSL*IFILMDWRRLKII 28
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 118 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 8
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 528 VFAYHQSSIFHHGNHAITIHGLPSKELKFLKPAEDVFH 415
           V   H+  IFH GNH         ++LK +  A D+ H
Sbjct: 363 VLEVHEDFIFHEGNH--------FRQLKLILEANDILH 392


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 197 FNPSAEEADEGTDSAVESGVT*S*TTG*SKHTPSVTRNPTHCTSKT 334
           +NPS    D G    V+S  T S  T     T S+T  PT  ++ T
Sbjct: 826 YNPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 453 ELKFLKPAEDVFHYFVHVCFKYFNLVR 373
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 543 KTS*LVFAYHQSSIFHHGNHAITIHGLPSKEL 448
           +T  LV  + +  +  + NH I +H L SK L
Sbjct: 53  ETELLVLRFREFGVKDNHNHPINLHSLRSKSL 84


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +1

Query: 307 KSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGM 486
           KS  L    ++ K  A LE    D+    +T  + + +++   FK  +F++  S   DG+
Sbjct: 212 KSSCLLTLSFLFKQTADLENLETDKKIDKQTFKSSLYENLSTLFKSDEFWSLVSSPQDGV 271

Query: 487 VAMMEYRALMVRKY 528
              +    L++ KY
Sbjct: 272 TVSLSDLLLIILKY 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,324
Number of Sequences: 5004
Number of extensions: 51772
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)