Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30521
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    30   0.37 
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    28   2.0  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 277 ILELFAGLNFISVVLKVE-EVTKLYSSPSLRSSTVGVTVLAALRVIRPTPMVFMNSSKFS 101
           IL+LFA +   SV L  +  + + +  P +      +T LAA    R    V  N +KFS
Sbjct: 216 ILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFS 275

Query: 100 EEVILY 83
            + +LY
Sbjct: 276 VDFLLY 281


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 275 DVRSDGAKVKSVCTFEGNTLKQVQMAPDGLEVTY 376
           DV  D  +++++C+F+   LK     P+   VTY
Sbjct: 309 DVTEDTERLENLCSFQSTILKHALQFPNCRHVTY 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,774
Number of Sequences: 5004
Number of extensions: 36822
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)