Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30521
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    88   1e-19
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    38   2e-04
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    37   2e-04
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.8  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   6.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   6.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   6.3  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 87.8 bits (208), Expect = 1e-19
 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
 Frame = +3

Query: 66  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANTVTPTVELRKDGDEYNLVTSSTFKTTD 245
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK T+
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 246 MKFSPAKSSKMSALTVLR*NPYA---HSKAIHSSKFRWPPTVLKSLTXXXFGPEEMXAVM 416
           +KF   +  +   +   +         +K I   K     T+ +      F   EM A+M
Sbjct: 63  IKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEKQTTIERE-----FSSTEMKAIM 117

Query: 417 XAXXVXCXRVYKV 455
               + C RVYK+
Sbjct: 118 KVDDIICTRVYKI 130



 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +2

Query: 260 GEEF*DVRSDGAKVKSVCTFEGNTLKQVQ 346
           GEEF +   DG KVKSVCT +GN L QVQ
Sbjct: 68  GEEFEEETVDGRKVKSVCTLDGNKLIQVQ 96


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 63  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANTV---TPTVELRKDGDEYNLVTSSTF 233
           ++F GK ++  S  NF+EF K +G     +   NTV    P+ EL K+GDE+   +SS  
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLG----DQNLVNTVLQPRPSFELSKNGDEWTFTSSSGD 56

Query: 234 KTTDMKF 254
            T    F
Sbjct: 57  NTYTKTF 63


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 66  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANTV---TPTVELRKDGDEYNLVTSSTFK 236
           +F GK ++  S  NF+EF K +G     +   NTV    P+ EL K+GDE+   +SS   
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLG----DQNLVNTVLQPRPSFELSKNGDEWTFTSSSGDN 55

Query: 237 TTDMKF 254
           T    F
Sbjct: 56  TYTKTF 61


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 264 SPG*TSYQWS*RLKR*LNCIRHHPYGAPR 178
           +P   +Y++S R K  +  +  HP+G PR
Sbjct: 314 NPQILTYKYSKRYKMAVAFMLSHPFGTPR 342


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 250 FISVVLKVEEVTKLYSSPSLRSSTV 176
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 311 CTFEGNTLKQVQMAPDGL 364
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 311 CTFEGNTLKQVQMAPDGL 364
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 311 CTFEGNTLKQVQMAPDGL 364
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,580
Number of Sequences: 438
Number of extensions: 2310
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)