Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30521
         (865 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24740.1 68418.m02920 expressed protein                             28   7.0  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   9.2  

>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = -1

Query: 343  NLLECIAFECAYGFHLSTVRADILELFAGLNFISVVLKVEEVTKLYSSPSLRSSTVGVTV 164
            N+++ I  EC    +    RAD L +F     +S++L   +++    +   RS T+  ++
Sbjct: 1118 NVVQHIPQECVIPLNQVLGRADCLNIFGRDLSVSLLLSESDISTFKKNAVCRSITLAASI 1177

Query: 163  LA 158
            +A
Sbjct: 1178 IA 1179


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   GAKNRRIKNLSLKSIKLIYKNGIRRQEIQDDFLREL**VHEDHRRGSDH 148
           G++N RIK  S K I L   +       Q+D   E+  V  DH + SDH
Sbjct: 173 GSENVRIKKASDKEIAL---DSASMSSAQEDHQEEILKVESDHLQVSDH 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,398,873
Number of Sequences: 28952
Number of extensions: 198964
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)