Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30520
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 49 7e-07
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.58
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 1.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 1.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 1.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 5.4
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 9.4
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 48.8 bits (111), Expect = 7e-07
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +3
Query: 501 LLDVKNISGRLLVGLRWWNYVDDNGKSHWVFE-ARQSRV-NKHESRLFW 641
L VKN+SGRLLVGLRW N +G+S W+FE A SR N + + FW
Sbjct: 90 LWTVKNVSGRLLVGLRWRNETGVDGESIWIFESADPSRPRNAVDQKTFW 138
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 373 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQLSADFW 507
HP +FF L+FR AI+ YIL +F+ SF+ F++ L+ D W
Sbjct: 47 HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLW 91
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 189 LNILNYIGIVGNPENSKGHIQSKSLSNIKCII 94
L +L IGI +P+ SK HI+ KSL + C I
Sbjct: 1145 LRMLQKIGISPDPDLSKKHIKLKSLIIVVCSI 1176
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 367 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQLSADFWMS 513
F+HP+ +FRC + + L + S SF SF+ + Q+ ++ S
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 132 CDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSD 233
CDL + ++LL+L NS +T +D + Y+D
Sbjct: 328 CDLYSLSNFLLYLENSCVITYDVSLDCSFNEYND 361
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 99 YT*YLRVIWIVCDLSNFQDYLLFLYNS 179
Y LR+I+ + D S F+DYL F Y +
Sbjct: 813 YVMILRLIYGIVDQSAFEDYLRFYYGN 839
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 367 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQL 492
FV+P + F L CS ++ ++L G F F+A + IR+L
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRL 396
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 529 RPLIFLTSRSLQTAVECLIRSLQ*MSRRTTHTGCTQLSQSIG 404
R L+FL ++ L+ VE R + + R T + S+S+G
Sbjct: 1182 RQLLFLENKKLKRTVESSNRVIADLQRGITEKDVSSTSESVG 1223
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 498 CRQLSNA*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 379
CR+ Y C++ G P Q NY H ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 361 KQFVHPYIVFFHLVFRCSAI 420
K+FV PY + + LVF S+I
Sbjct: 372 KEFVQPYFIIYTLVFFGSSI 391
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 506 QKSADSCRMP-NTKLAMNESENHPHRMYTIIAEHRNTR 396
QK S R+ NT+ + + N P + +TI+++ TR
Sbjct: 208 QKEGSSWRLDLNTRDKILDKNNRPLQPFTIVSDRNETR 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,456
Number of Sequences: 5004
Number of extensions: 54927
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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