Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30520
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 64 1e-10
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 63 2e-10
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 2.4
08_01_0646 + 5592386-5592493,5592736-5592807,5592882-5593046,559... 29 4.2
05_01_0040 - 273384-273437,273920-274102,274465-274677,275479-27... 28 5.6
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 27 9.7
01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046 27 9.7
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
Frame = +3
Query: 510 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNKHESRLFW 641
VKN+SGR+LVGLRWWN +DD G S W FE +R+NK +S LFW
Sbjct: 88 VKNVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFW 135
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 361 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQLSADFWM 510
+ + +P FFH++F+ A+ YIL F +F+ FV+ + + DFW+
Sbjct: 38 ENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWV 87
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
Frame = +3
Query: 510 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNKHESRLFW 641
VKN+SGR+LVG+RWWN +DD G S W FE +R+NK +S LFW
Sbjct: 94 VKNVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFW 141
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 361 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQLSADFWM 510
+ + +P FH++F+ A++ YIL F SF+ FV+ + + DFW+
Sbjct: 44 ENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWV 93
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 563 GRQRQVALGVRGPSEPGQQAREPPVLDG 646
G+QR + LG+ GP G PPVL+G
Sbjct: 245 GQQRMIDLGITGPE--GHALSRPPVLEG 270
>08_01_0646 +
5592386-5592493,5592736-5592807,5592882-5593046,
5594218-5594454
Length = 193
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 375 SLHSVLPPGVPMLCDNCVHPVWVVLRLIHCKLRIRHSTA 491
+L ++ P VP++ D V P++V R H LR R S A
Sbjct: 64 ALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRA 102
>05_01_0040 -
273384-273437,273920-274102,274465-274677,275479-276294,
276431-276823,277233-277238
Length = 554
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 349 PLHQMRWCHHQAAGPLPN 296
PLH +WCH A PL N
Sbjct: 221 PLHSGQWCHDAEARPLSN 238
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -2
Query: 450 GEPPTQDVHNYR------RASEHQVEEHYVGMDKLFISIIL 346
GEPP D+H R R + Q++EH+ K F+S+ L
Sbjct: 235 GEPPLADIHPMRVLFMIPRENPPQLDEHFSKPMKEFVSLCL 275
>01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046
Length = 502
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 292 MNSATVPLLDDDTIAFGEEDNANKQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSF 459
+ + V L D D +E+ N+ + P I H +C+ +++ CG S SF
Sbjct: 435 LQTLVVVLTDGDGDHASQEELGNR--LKPLIYSTHRASKCAEFFIFVRCGGTSWSF 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,037,272
Number of Sequences: 37544
Number of extensions: 352695
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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