Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30520
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)                84   1e-16
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   31   1.1  
SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)               27   9.9  
SB_56901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
 Frame = +1

Query: 319 DDDTIAFGEEDNA--NKQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQL 492
           +D  + FG+E+ A   ++F HPY+ FFHL FR S++I Y+LCGWFSDSFI +FV+ +  L
Sbjct: 162 EDVALNFGDEEEALSRRKFRHPYVSFFHLFFRISSVIAYLLCGWFSDSFITNFVVIVLLL 221

Query: 493 SADFW 507
           S DFW
Sbjct: 222 SCDFW 226



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +3

Query: 495 CRLLDVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ 605
           C    VKN+SGRLLVGLRWWNYVD++G SHWVFE+++
Sbjct: 223 CDFWTVKNVSGRLLVGLRWWNYVDEDGNSHWVFESKK 259


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 633 GGSRAC*PGSDGPRTPSATCRCRPHS 556
           GG     PG  G RTP   CRC  HS
Sbjct: 313 GGGGGGSPGLSGRRTPRGRCRCTQHS 338


>SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 379 YIVFFHLVFRCSAIIVYILCGWFSDSFIASFVL--GIRQLS 495
           Y VFFH+  +CS I  +  C  FS +F +  +L   IR++S
Sbjct: 358 YSVFFHVGPKCSCIGNFRNCARFSAAFYSEDILKESIRKIS 398


>SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 286 PAMNSATVPLLDDDTIAFGEEDNANKQFVHPYIVFFHLVFRCSAIIVYILCGW 444
           P+++SA   L+ D  +A+          ++ YI+F +L  RC    V   CGW
Sbjct: 158 PSLSSAL--LIVDFFLAYSSHTLQLTSTLNVYIIFRYLGQRCRQARVRAACGW 208


>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
          Length = 823

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 274 LMNHPAMNSATVPLLDDDTIAFGEEDNANKQFVHPYIVFFHLVFRCSAI 420
           +MN     + TV + +  T  +G + N  ++ VHPY+     + R + I
Sbjct: 664 IMNGAVCTALTVMVFEASTSLYGTKVNQPRKTVHPYMEPIRSISRVAVI 712


>SB_56901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 577 LPLSST*FHHLSPTSNRPLIFLTS--RSLQTAVECLIRSLQ*MSRRTTHT 434
           LPL+S   HH +  S+ PL+  TS  R     + C I +   ++R+TT T
Sbjct: 73  LPLTSYNKHHKAENSHLPLLHTTSITRETTATLRCFITTS--ITRQTTAT 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,965,007
Number of Sequences: 59808
Number of extensions: 415432
Number of successful extensions: 892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)