Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30520
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...    65   4e-11
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...    65   4e-11

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
 Frame = +3

Query: 510 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNKHESRLFWMG 647
           VKNI+GRLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+G
Sbjct: 76  VKNITGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLG 123



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 361 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQLSADFW 507
           + F  P IV  HL F+ +A+  Y    +F++SFI  F++ +  LS DFW
Sbjct: 26  QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFW 74


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
 Frame = +3

Query: 510 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNKHESRLFWMG 647
           VKNI+GRLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+G
Sbjct: 118 VKNITGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLG 165



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 361 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQLSADFW 507
           + F  P IV  HL F+ +A+  Y    +F++SFI  F++ +  LS DFW
Sbjct: 68  QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFW 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,908
Number of Sequences: 27780
Number of extensions: 319371
Number of successful extensions: 700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)