Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30520
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09330.1 68414.m01044 expressed protein contains 3 transmembr...    61   5e-10
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di...    33   0.22 
At2g34720.1 68415.m04264 CCAAT-binding transcription factor (CBF...    30   1.2  
At5g02910.1 68418.m00234 F-box family protein similar to ribosom...    30   1.5  
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont...    28   6.1  
At4g32910.1 68417.m04683 expressed protein                             27   8.1  
At4g06676.1 68417.m01071 expressed protein ; expression supporte...    27   8.1  

>At1g09330.1 68414.m01044 expressed protein contains 3 transmembrane
           domains; contains Pfam profile PF05832: Eukaryotic
           protein of unknown function
          Length = 186

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 4/48 (8%)
 Frame = +3

Query: 510 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNKHESRLFW 641
           VKN+SGR+LVGLRWWN ++D G+S W FE+      +R+NK +S LFW
Sbjct: 62  VKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFW 109



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +1

Query: 361 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLGIRQLSADFWM 510
           + + +P    FH++F+ +A+  YIL   F +SF+  FV+ +   + DFW+
Sbjct: 12  ENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWV 61


>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 412

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 274 LMNHPAMNSATVPLLDDDTIAFGEEDNANKQFVHPYIVFFHLVFRCSAII-VYILCGW 444
           L++ P    A  PLL  D  A  +E+  NK+ V     FFH++F  +++    +L GW
Sbjct: 308 LLSPPDSPRAEKPLLPIDGKAEEKEEKENKKPVSYSYAFFHIIFSLASMYSAMLLTGW 365


>At2g34720.1 68415.m04264 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 198

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 396 PGVPMLCDNCVHPVWVVLRLIHCKLRIRHSTA 491
           PGVP+ CD    PV+V  +  H  LR R S A
Sbjct: 87  PGVPLQCDAVEEPVFVNAKQYHGILRRRQSRA 118


>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
           RNA apurinic site specific lyase [Triticum aestivum]
           GI:6505722; contains F-box domain Pfam:PF00646
          Length = 458

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 432 PVWVVLRLIHCKLRIRHSTAVCRLLDVKNIS 524
           P  +V   +HC LR+RHS   C L+DV +++
Sbjct: 216 PTKIVAPHLHC-LRLRHSRLPCSLVDVSSLT 245


>At2g20210.1 68415.m02363 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 604

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 447 LRLIHCKLRIRHSTAVCRLLDVKNI 521
           L LIHCKL +   +A+C  L  K I
Sbjct: 233 LELIHCKLSLSSISAICTSLHEKGI 257


>At4g32910.1 68417.m04683 expressed protein
          Length = 716

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 483 STAVCRLLDVKNISGRL--LVGLRWWNYVDDNGKSHWVFEAR 602
           S  +CRL ++ N+S +L  + G+  W +        W+ +AR
Sbjct: 512 SLEICRLYELSNVSAKLMKISGVHHWKHGRKGSGIFWLQQAR 553


>At4g06676.1 68417.m01071 expressed protein ; expression supported
           by MPSS
          Length = 258

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 515 LDIQKSADSCRMPNTKLAMNESENHPHRMYTIIAEHRNTRWKNT 384
           L I  S DSC   N + A+  S+ H H      A  + T  KNT
Sbjct: 211 LVILSSTDSC-FSNFRAALRSSDTHAHGRRHAAANSKATDMKNT 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,309
Number of Sequences: 28952
Number of extensions: 279910
Number of successful extensions: 532
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)