Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30517
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   107   2e-24
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   5.5  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  107 bits (256), Expect = 2e-24
 Identities = 47/78 (60%), Positives = 58/78 (74%)
 Frame = +2

Query: 254 IPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 433
           +PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGH
Sbjct: 188 MPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGH 247

Query: 434 PEVYILILPGFGIISHII 487
           PEVYILI+P FG++SHII
Sbjct: 248 PEVYILIMPAFGVVSHII 265



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3

Query: 75  GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 185
           G G G TVYPPLSS  +H G ++DLAI SL L GISS
Sbjct: 128 GPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISS 164



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 18/30 (60%), Positives = 28/30 (93%)
 Frame = +1

Query: 568 IV*AHHIFTGGIDIDTRAYFTSATIIIAVP 657
           +V +HH+FT G+D+DTRAYF++AT++IA+P
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIP 321


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 498 EEKKNFWLFRDNLCYTSHWVIRVHCLSSSYIH 593
           E+ K +W +RD + YT   ++   C   +  H
Sbjct: 128 EQTKEYWRWRDVILYTEEVLLEALCFDFTVEH 159


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +3

Query: 474 FPILFHKKEEKKNFWLFRDNLCYT 545
           +P++ H+  + KN+++F+ +L +T
Sbjct: 714 YPLIEHEVLDSKNYFVFKGSLLFT 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,681
Number of Sequences: 5004
Number of extensions: 39532
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)