Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30517
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   35   0.051
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     28   7.7  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     28   7.7  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 14/19 (73%), Positives = 19/19 (100%)
 Frame = +1

Query: 601 IDIDTRAYFTSATIIIAVP 657
           +++DTRAYFT+AT+IIAVP
Sbjct: 1   MNVDTRAYFTAATMIIAVP 19


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 585 YIHWRYRY*YTSIFYLSYYNYCC 653
           Y ++ Y Y Y   +Y  YY YCC
Sbjct: 12  YYYYYYYYYYYYYYYYYYYYYCC 34


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 513 FWLFRDNLCYTSHWVIRVHCLSSSYIHWRYRY*YTSIFYLSYYNY 647
           +WL++  L   S+W  + +  + SY  W Y+    ++ Y  Y +Y
Sbjct: 123 YWLYKSYLNVLSYWPYKSYLNALSY--WPYKSYLNALSYCPYKSY 165


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 513 FWLFRDNLCYTSHWVIRVHCLSSSYIHWRYRY*YTSIFYLSYYNY 647
           +WL++  L   S+W  + +  + SY  W Y+    ++ Y  Y +Y
Sbjct: 107 YWLYKSYLNVLSYWPYKSYLNALSY--WPYKSYLNALSYCPYKSY 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,072,049
Number of Sequences: 59808
Number of extensions: 271864
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)