Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30516
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   125   4e-30
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   125   4e-30
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    34   0.015
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    29   0.58 
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   3.1  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   4.1  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   5.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.1  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   9.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.4  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  125 bits (302), Expect = 4e-30
 Identities = 56/78 (71%), Positives = 67/78 (85%)
 Frame = +3

Query: 33  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 212
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 213 EEEVEKIITIMSNPGSIR 266
            EE+E+I+TI+ NP   +
Sbjct: 61  TEELERIVTIIQNPSQFK 78



 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 45/60 (75%), Positives = 51/60 (85%)
 Frame = +2

Query: 257 QYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 436
           Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRVRGQH
Sbjct: 76  QFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  125 bits (302), Expect = 4e-30
 Identities = 56/78 (71%), Positives = 67/78 (85%)
 Frame = +3

Query: 33  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 212
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 213 EEEVEKIITIMSNPGSIR 266
            EE+E+I+TI+ NP   +
Sbjct: 61  TEELERIVTIIQNPSQFK 78



 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 45/60 (75%), Positives = 51/60 (85%)
 Frame = +2

Query: 257 QYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 436
           Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRVRGQH
Sbjct: 76  QFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 359 DLERLKKIRAHRGMRHYWGLRVRGQH 436
           D+ RL  IR +RGMRH  GL V GQ+
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPVNGQN 101


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 242 HVESWQYKIPDWFLNRQKDIVDGKYSQLTSSNL 340
           HV+SW Y IP  F+N++  ++  + S +T  NL
Sbjct: 502 HVKSWSYTIPKPFVNKRSKVLPLRPS-VTHDNL 533


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 245 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 135
           +++D  F+ F C F+     +  G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 362 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 261
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 96  GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 188
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +2

Query: 230  NYHYHVESWQYKIPDWFL----NRQKDIVDGKYSQLTSSNLDSKLR 355
            NYH   E W+ KI  +      N +KDI  G +      NL   LR
Sbjct: 1720 NYHQVNEDWRLKIIKFMFRLQDNIEKDISFGSFGSPWEFNLRDTLR 1765


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 328 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 471
           L  L FK+       + D   +R AT +  S  W A+  YWQ     W
Sbjct: 43  LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 200 WRMHRRRG*KNYHYHVESW 256
           W   RR+G + +H HV+ W
Sbjct: 908 WTGTRRQGWEGHHIHVQYW 926


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,571
Number of Sequences: 5004
Number of extensions: 43171
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)