Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30516
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 115 2e-26
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical pr... 28 4.8
U13019-15|AAK84567.2| 317|Caenorhabditis elegans Serpentine rec... 28 4.8
AL132876-16|CAD21672.2| 406|Caenorhabditis elegans Hypothetical... 27 6.4
AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRN... 27 6.4
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 27 8.5
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 27 8.5
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 115 bits (277), Expect = 2e-26
Identities = 50/78 (64%), Positives = 66/78 (84%)
Frame = +3
Query: 33 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 212
MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAGE T
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60
Query: 213 EEEVEKIITIMSNPGSIR 266
EE+ +KI+TIM NP +
Sbjct: 61 EEDFDKIVTIMQNPSQYK 78
Score = 111 bits (267), Expect = 3e-25
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = +2
Query: 257 QYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 436
QYKIP+WFLNRQKDI DGK QL S+ +D+KLREDLER+KKIR HRG+RHYWGLRVRGQH
Sbjct: 76 QYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 354 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQR 482
+K +R + AL +TGA + + +TL LLA LL QR
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQR 179
>Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical
protein C25D7.10 protein.
Length = 225
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = -2
Query: 436 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*EPVWYLIL 257
V H A +S ++S L F+ F I + GQL +T+ N YL+L
Sbjct: 102 VFLVHLLAIFLSATTLSLTFDTELVYFSCFIIFMNTGQLVFYTLQN----------YLVL 151
Query: 256 PGFDMIVIIFSTSS 215
M++++ +TSS
Sbjct: 152 TPLKMLILLIATSS 165
>U13019-15|AAK84567.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 5 protein.
Length = 317
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 314 IYHQQYPFAYLGTSLVSYTARIRHDSDNFFNLFFCAFASTL 192
I + +P + G ++YT R+R S + F + F A + T+
Sbjct: 164 IISETFPVSIFGGFTLAYTKRVRWASLSMFQMIFMAISLTI 204
>AL132876-16|CAD21672.2| 406|Caenorhabditis elegans Hypothetical
protein Y105E8A.20 protein.
Length = 406
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 227 KNYHYHVESWQYKIPDWFLNRQKDIVD-GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 403
+NY + + ++ K+ +W +NR+ +V KY L ++L+ + EDL + + R+ R
Sbjct: 58 ENYMFRLSEFREKVAEW-INRENIVVHPSKYKSLALTSLE--MSEDLS-ISRSRS----R 109
Query: 404 HYWGLRV 424
WG+ V
Sbjct: 110 LSWGIPV 116
>AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRNA
synthetase (mitochondrial)protein.
Length = 500
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 227 KNYHYHVESWQYKIPDWFLNRQKDIVD-GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 403
+NY + + ++ K+ +W +NR+ +V KY L ++L+ + EDL + + R+ R
Sbjct: 152 ENYMFRLSEFREKVAEW-INRENIVVHPSKYKSLALTSLE--MSEDLS-ISRSRS----R 203
Query: 404 HYWGLRV 424
WG+ V
Sbjct: 204 LSWGIPV 210
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical protein
R06C7.8 protein.
Length = 987
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 251 SWQYKIPDW-FLNRQKDIVDGKYSQLTSSNL-DSKLREDLERLKKIR 385
SW Y+ + F +V GKY+QLT +++ D L D++R +R
Sbjct: 881 SWTYQADYFGFAATMAVVVAGKYAQLTGASVGDYSLNVDIKRRNILR 927
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 116 CDDGYQRCWPEVLQHCS 166
C + YQ CWP +L CS
Sbjct: 1512 CREYYQICWPPILLACS 1528
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,563,825
Number of Sequences: 27780
Number of extensions: 246211
Number of successful extensions: 777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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