Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30515
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    22   6.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.0  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 522 LTSAGRSSRGLGKGHRYSQTKGGSRRAALLRRNTLQLRRKR*TS 653
           L   G+  R  G+G +YS  + G +  +  ++     +RKR TS
Sbjct: 5   LQEFGKRGRSTGRGLKYSGQQHGPQSDSRNQQLRTGEKRKRSTS 48


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 512 DAWSDFGWSQLP 547
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 512 DAWSDFGWSQLP 547
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 97  KTHNIAQFFPIQLLNISVGTHLS 29
           + H +   FPI L  ISV T L+
Sbjct: 386 RQHAVTAKFPIYLYRISVETKLN 408


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 8   ARRLPQAAKMGAY 46
           ++R+PQ AK GAY
Sbjct: 286 SQRVPQLAKNGAY 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,158
Number of Sequences: 336
Number of extensions: 3515
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)