Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30515
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   112   6e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   112   6e-26
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.94 
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    27   2.2  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    27   2.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.8  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    26   6.6  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   6.6  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   8.8  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  112 bits (269), Expect = 6e-26
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +1

Query: 256 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 435
           V KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVIL
Sbjct: 75  VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVIL 134

Query: 436 VDPSHKAIRRDPKINWIVNAVHKH 507
           VDPSHKAIRRDP+INWIVN VHKH
Sbjct: 135 VDPSHKAIRRDPRINWIVNPVHKH 158



 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 41/59 (69%), Positives = 50/59 (84%)
 Frame = +2

Query: 35  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 211
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +3

Query: 510 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAALLRRNTLQLRRKR 644
           E RGLTS G+ SRG+GKGHR++ +    + A  LR NTL LRR R
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  112 bits (269), Expect = 6e-26
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +1

Query: 256 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 435
           V KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVIL
Sbjct: 75  VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVIL 134

Query: 436 VDPSHKAIRRDPKINWIVNAVHKH 507
           VDPSHKAIRRDP+INWIVN VHKH
Sbjct: 135 VDPSHKAIRRDPRINWIVNPVHKH 158



 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 41/59 (69%), Positives = 50/59 (84%)
 Frame = +2

Query: 35  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 211
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59



 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 26/45 (57%), Positives = 31/45 (68%)
 Frame = +3

Query: 510 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAALLRRNTLQLRRKR 644
           E RGLTS G+ SRG+GKGHRY+ +    + A  LR NTL LRR R
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 395 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 508
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 474 DQLDRECCT*ASEMRGLTSAGRS--SRGLGKGHRYSQTKGGSRRAAL 608
           D LDRE  T  S +  +  AG+S  S   GKG + S T+   RR AL
Sbjct: 212 DALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRAL 258


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 504 ASEMRG-LTSAGRSSRGLGKG-HRYSQTKGGSRRAALLRRN 620
           A++ RG ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 229 ANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 400  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 504
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 474 DQLDRECCT*ASEMRGLTSAGRS--SRGLGKGHRYSQTKGGSRRAAL 608
           D LDRE  T  S +  +   G+S  S   GKG + S T+   RR AL
Sbjct: 212 DALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRAL 258


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 474 DQLDRECCT*ASEMRGLTSAGRS--SRGLGKGHRYSQTKGGSRRAAL 608
           D LDRE  T  S +  +   G+S  S   GKG + S T+   RR AL
Sbjct: 212 DALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRAL 258


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 577 KQREAHAGQLCSDATLFNYVANDKHLSKTVSDFPFAYFCM 696
           K+ E+    LC  +    Y+    HL      FP+ YFC+
Sbjct: 154 KKEESSNKFLCPLSKYLIYLFLSIHLFYVFQSFPWTYFCL 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,186
Number of Sequences: 5004
Number of extensions: 56716
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)