Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30515
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   8e-25
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 32   0.57 
SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)                  30   1.8  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   4.1  
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)                 29   5.4  
SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)                       28   7.1  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  28   9.4  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  111 bits (266), Expect = 8e-25
 Identities = 51/84 (60%), Positives = 59/84 (70%)
 Frame = +1

Query: 256 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 435
           V KGATYGKP + GVN+LK  R+L+S+AEE            +SYWV QDS YKYFEVI+
Sbjct: 75  VPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIM 134

Query: 436 VDPSHKAIRRDPKINWIVNAVHKH 507
           VDP HKAIRRD +INWI    HKH
Sbjct: 135 VDPFHKAIRRDARINWICKPTHKH 158



 Score =  108 bits (260), Expect = 4e-24
 Identities = 46/59 (77%), Positives = 55/59 (93%)
 Frame = +2

Query: 35  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 211
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGF 59



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 26/45 (57%), Positives = 32/45 (71%)
 Frame = +3

Query: 510 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAALLRRNTLQLRRKR 644
           E+RGLT+AG  +RG+ KGH Y++  G SRRA   R NTL LRR R
Sbjct: 160 ELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 124 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQASVAKGATYGKPKSH 294
           P  D+      AH+    P T ++PC    C  QNPC+   P     + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query: 82  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 246
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+   P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758

Query: 247 QASVAKGATYGKPKSHGVNQ 306
                + +T G P++ G  Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778


>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
          Length = 498

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = -3

Query: 719 LSHWLSICIQ-K*ANGKSLTVLD----RCLSFAT*LKSVASEQSCPA*ASLCLRVSMSLA 555
           L+ W+ + +Q    N  S TV+     R  +FAT + +V      P  A   + +S+ + 
Sbjct: 248 LTEWIVLYVQLSTGNYGSFTVVQLPNVRNATFATEIDNV------PNGAQETIAISLPID 301

Query: 554 ETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
            T+G   SR  T  + C C    + L +G+
Sbjct: 302 NTTGLTASRGYTIRIECYCIDPNVMLTMGT 331


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 92  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 205
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 599 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
           P  A   + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 190 PNGAQETIAISLPIDNTTGLTASRGYTIRIECYCIEPNVMLTMGT 234


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 599 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
           P  A   + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 302 PNGAQETIAISIPIDNTTGLTASRGYTIRIECYCIDTNVMLTMGT 346


>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
          Length = 536

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 578 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
           + +S+ +  T+G   SR  TT + C C      L +G+
Sbjct: 364 IAISLPIDNTTGLTASRGYTTRIECYCIDPNAMLTMGT 401


>SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)
          Length = 351

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 578 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
           + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 71  IAISLPIDNTTGLTASRGYTVRIGCYCIDSNVMLTMGT 108


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 169 GQSPKTRLPC*TRLCCIQNPCATW----WPQASVAKG 267
           G+  K R P  + LC +  PCATW    W Q SV  G
Sbjct: 134 GKCDKQRQPSSSTLCNM-GPCATWQTGTWSQCSVTCG 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,295,613
Number of Sequences: 59808
Number of extensions: 477336
Number of successful extensions: 1169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)