Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30514
(638 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 159 4e-38
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 93 5e-18
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 80 5e-14
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 8e-13
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 74 3e-12
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 74 3e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 70 5e-11
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 69 7e-11
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 69 7e-11
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 69 1e-10
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 67 3e-10
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 67 3e-10
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 2e-09
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 63 6e-09
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 62 8e-09
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 60 6e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 6e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 59 1e-07
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 58 1e-07
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 58 1e-07
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 55 1e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 52 9e-06
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 52 1e-05
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 49 8e-05
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 49 8e-05
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 6e-04
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 46 8e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 8e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.001
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 45 0.002
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 45 0.002
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 44 0.002
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 44 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 44 0.003
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.009
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.017
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.022
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.022
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 41 0.022
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.029
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.051
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.051
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.051
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.051
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.051
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 40 0.067
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.088
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.12
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 38 0.15
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 38 0.15
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 38 0.20
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 38 0.20
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.20
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 38 0.20
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.20
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.20
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.27
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.36
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 36 0.62
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.62
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.82
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.82
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 36 1.1
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 1.1
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 1.1
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.1
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.1
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 1.4
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.9
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.9
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 35 1.9
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 35 1.9
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.5
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 34 3.3
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 3.3
UniRef50_Q6AJU9 Cluster: Related to two-component system respons... 34 3.3
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 3.3
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.4
UniRef50_A6NRZ3 Cluster: Putative uncharacterized protein; n=1; ... 33 7.7
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 33 7.7
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 159 bits (387), Expect = 4e-38
Identities = 77/84 (91%), Positives = 81/84 (96%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
LVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ
Sbjct: 81 LVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQ 140
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
VVNIPSFIVRLDS KHIDFSL+SP
Sbjct: 141 VVNIPSFIVRLDSQKHIDFSLRSP 164
Score = 138 bits (334), Expect = 1e-31
Identities = 64/72 (88%), Positives = 70/72 (97%)
Frame = +3
Query: 39 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 218
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 219 PKRLFEGNALLR 254
P+RLFEGNALLR
Sbjct: 68 PRRLFEGNALLR 79
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 93.1 bits (221), Expect = 5e-18
Identities = 47/96 (48%), Positives = 66/96 (68%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQ
Sbjct: 80 LHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQ 139
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSPSVEVVLDVSRGR 544
VV++PSF+VR++S I + +P ++ R R
Sbjct: 140 VVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKR 175
Score = 83.4 bits (197), Expect = 4e-15
Identities = 37/70 (52%), Positives = 51/70 (72%)
Frame = +3
Query: 45 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 224
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 225 RLFEGNALLR 254
RL EG ALLR
Sbjct: 69 RLLEGAALLR 78
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 79.8 bits (188), Expect = 5e-14
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +3
Query: 42 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 221
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 222 KRLFEGNALLR 254
+R+FEG ALLR
Sbjct: 59 RRIFEGEALLR 69
Score = 70.5 bits (165), Expect = 3e-11
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +2
Query: 263 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 421
R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 73 RYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 8e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 206
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 56.8 bits (131), Expect = 4e-07
Identities = 30/74 (40%), Positives = 44/74 (59%)
Frame = +2
Query: 296 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 475
+D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 94 IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGE 153
Query: 476 GKHIDFSLKSPSVE 517
I ++ KSP V+
Sbjct: 154 ETTISYAGKSPFVD 167
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 74.1 bits (174), Expect = 3e-12
Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 2/94 (2%)
Frame = +2
Query: 221 QEIVRR*CPSTCLVRIGVLDEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 394
+ ++RR L I + D++++ L+ VL L I +LERRLQ +VF AGLAKS+HHA
Sbjct: 71 RSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHA 130
Query: 395 RILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 496
R+LI R I ++ Q+V++P F+VR D I+++
Sbjct: 131 RLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYN 164
Score = 57.6 bits (133), Expect = 2e-07
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 45 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 224
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 225 RL-FEGNALLR 254
+ G +LLR
Sbjct: 65 DIPINGRSLLR 75
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 74.1 bits (174), Expect = 3e-12
Identities = 36/90 (40%), Positives = 60/90 (66%)
Frame = -2
Query: 508 WRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQE 329
WR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++ QE
Sbjct: 29 WRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQE 88
Query: 328 VLNLQTKHIIEFHLFFIQYSNTNQTRRRAL 239
+ NLQ++ II+ L F Q +N++Q+ +++
Sbjct: 89 IFNLQSQDIIQLLLVFRQDTNSHQSSDQSI 118
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 209
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 60.1 bits (139), Expect = 4e-08
Identities = 35/86 (40%), Positives = 48/86 (55%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI + +
Sbjct: 82 LQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGR 140
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSPSV 514
V IP + V + I ++ SP V
Sbjct: 141 RVTIPGYTVSAKEQEEISYAGSSPLV 166
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +2
Query: 296 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 475
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDN 154
Query: 476 GKHIDFSLKS 505
I FSL S
Sbjct: 155 EIFISFSLNS 164
Score = 65.7 bits (153), Expect = 9e-10
Identities = 33/90 (36%), Positives = 54/90 (60%)
Frame = +3
Query: 42 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 221
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 222 KRLFEGNALLRVWFVLEYWMKNR*NSIMCL 311
K + +L WF +Y N N CL
Sbjct: 70 KIPSQSYGIL--WFCYKYNFMN--NMTFCL 95
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 69.3 bits (162), Expect = 7e-11
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + +
Sbjct: 77 LYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGR 136
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
V P +IV IDF SP
Sbjct: 137 RVTSPGYIVMRGEEDLIDFYPTSP 160
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 206
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 69.3 bits (162), Expect = 7e-11
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +
Sbjct: 78 LKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGR 137
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
VV PS++V ++ I ++ SP
Sbjct: 138 VVTAPSYMVTVEEEDKISYAKNSP 161
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +3
Query: 42 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 203
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 68.9 bits (161), Expect = 1e-10
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Frame = +2
Query: 257 LVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 418
LV G+L E +MK + GL+I F E++LQTQVF+ L KSI HA +L+ H
Sbjct: 81 LVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCH 139
Query: 419 IRVRKQVVNIPSFIVRLDSGKHIDF 493
IR+ KQVV+I F V LDS KH DF
Sbjct: 140 IRIGKQVVDIAFFFVGLDSRKHTDF 164
Score = 52.8 bits (121), Expect = 7e-06
Identities = 27/39 (69%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 141 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGNALLR 254
EVWRVK+TL +IRKA E LL L EKDP+ LFE N LLR
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLR 79
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 67.3 bits (157), Expect = 3e-10
Identities = 32/69 (46%), Positives = 46/69 (66%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V +
Sbjct: 79 LYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGR 138
Query: 437 VVNIPSFIV 463
V P F+V
Sbjct: 139 RVTSPGFLV 147
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 63 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 236
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEMPF 75
Query: 237 GNALLRVWFV 266
L ++ F+
Sbjct: 76 KEKLYKMGFI 85
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 67.3 bits (157), Expect = 3e-10
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +2
Query: 251 TCLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 430
T L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I HI V
Sbjct: 74 TKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVN 132
Query: 431 KQVVNIPSFIVRLDSGKHIDFSLKSP 508
+VV+ PS++V+ + I+F SP
Sbjct: 133 GEVVDAPSYLVKKEEEDKIEFVPFSP 158
Score = 41.5 bits (93), Expect = 0.017
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3
Query: 63 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 212
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 197
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
Score = 56.4 bits (130), Expect = 5e-07
Identities = 38/103 (36%), Positives = 51/103 (49%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI V +
Sbjct: 80 LSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGR 138
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSPSVEVVLDVSRGRTSARDRV 565
V +P +V I + SP + + + S +RV
Sbjct: 139 RVTVPGMLVEAQYEDTIAYYENSPIANELHPIRQALLSPAERV 181
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 62.9 bits (146), Expect = 6e-09
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V +
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGK 136
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
+N PS++V L I + SP
Sbjct: 137 KINAPSYLVPLVEEDAISYMPNSP 160
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 203
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 62.5 bits (145), Expect = 8e-09
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I HI + +
Sbjct: 86 LIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGR 144
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
IP +V + HI + SP
Sbjct: 145 KATIPGMLVSKEDEMHIGYYGSSP 168
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 200
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 59.7 bits (138), Expect = 6e-08
Identities = 33/60 (55%), Positives = 36/60 (60%)
Frame = -3
Query: 507 GDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSKK 328
G+ KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RRSKK
Sbjct: 59 GELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -1
Query: 152 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 48
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +3
Query: 144 VWRVKYTLARIRKAARELLTLEEKDPKRLF 233
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + +
Sbjct: 84 LQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGR 142
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
+ +P ++V + + + SP
Sbjct: 143 KITVPGYLVLKSEEDMLSYYVGSP 166
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 200
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + +
Sbjct: 77 LVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGK 135
Query: 437 VVNIPSFIVRLDSGKHIDF 493
+N P +V ++IDF
Sbjct: 136 KINAPGHLVEKADEENIDF 154
Score = 49.6 bits (113), Expect = 6e-05
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 48 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDP 221
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++E+
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDERAD 68
Query: 222 KRLFEGNALLRVWFV 266
K + L+R F+
Sbjct: 69 KEKELLDHLVRAGFI 83
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 58.4 bits (135), Expect = 1e-07
Identities = 32/79 (40%), Positives = 47/79 (59%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V
Sbjct: 74 LQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGS 132
Query: 437 VVNIPSFIVRLDSGKHIDF 493
V PS+ V + + F
Sbjct: 133 RVTEPSYTVPVSEENTLAF 151
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +3
Query: 30 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 200
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I V +
Sbjct: 75 MVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMK 133
Query: 437 VVNIPSFIV 463
V+IP ++V
Sbjct: 134 RVSIPGYMV 142
Score = 40.3 bits (90), Expect = 0.038
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 48 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 203
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 278 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 385
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 52.4 bits (120), Expect = 9e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 212
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 213 KDPKR 227
+ +R
Sbjct: 64 EVRER 68
Score = 51.2 bits (117), Expect = 2e-05
Identities = 34/101 (33%), Positives = 51/101 (50%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L RIG++ K LD VL L++ D L RRLQT V K + + AR + HI + +
Sbjct: 77 LARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDR 135
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSPSVEVVLDVSRGRTSARD 559
VV IPS+ V ++ I + S ++ R +AR+
Sbjct: 136 VVTIPSYTVYVEEEGDIKLTGGSAFATILEKSKRAEAAARE 176
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 52.0 bits (119), Expect = 1e-05
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 490
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 491 FSLKSPSVEVVL 526
+S ++ +VL
Sbjct: 143 IKPESLNLPIVL 154
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 49.2 bits (112), Expect = 8e-05
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +2
Query: 272 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 451
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIA 125
Query: 452 SFIVRLDSGKHIDFSLKSPSVEVV 523
SF V++ G + S +VE++
Sbjct: 126 SFRVKV--GDIVSVIENSKNVELI 147
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 49.2 bits (112), Expect = 8e-05
Identities = 29/75 (38%), Positives = 41/75 (54%)
Frame = +2
Query: 305 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 484
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 485 IDFSLKSPSVEVVLD 529
I+F KS +++ V D
Sbjct: 140 IEFRQKSRNLDAVAD 154
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 42 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 200
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +2
Query: 308 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 466
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 305 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 46.0 bits (104), Expect = 8e-04
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +2
Query: 281 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 460
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 461 VRLDSGKHIDFSLKSPS-VEVVLDVSRGRT 547
VR + S +S + V+ LD +RG T
Sbjct: 137 VRPGDVVSLKDSSRSKALVQRFLDGARGET 166
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 46.0 bits (104), Expect = 8e-04
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +2
Query: 284 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 463
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 464 RLDSGKHIDFSLKSPSVEVV 523
+ I ++K S+++V
Sbjct: 152 K--PKDVISVAMKQRSLQLV 169
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +2
Query: 305 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 484
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 485 IDFSLKSPSVEVVLD 529
I KS + V+D
Sbjct: 146 ISLREKSRANAGVVD 160
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 284 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 463
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 464 R 466
+
Sbjct: 113 K 113
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +2
Query: 305 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 484
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ L G
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSY--SLKPGDI 138
Query: 485 IDFSLKSPSVEVVLDVSRGR 544
+ +S S+E + + GR
Sbjct: 139 VSVRERSKSLEAITNSLAGR 158
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 425 VRKQVVNIPSFIVRLDSGKHIDFSLKSP 508
V +Q+VNIPSFIVRL+S KHI FSL SP
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSP 54
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 44.4 bits (100), Expect = 0.002
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 490
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 491 FSLKSPSVEVVLD 529
KS +++ V D
Sbjct: 142 LRDKSKNLQQVKD 154
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 44.4 bits (100), Expect = 0.002
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPS 511
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKSRK 143
Query: 512 VEVVLD 529
E+ ++
Sbjct: 144 TEMFVN 149
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 490
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 491 FSLKSPSVEVV 523
KS + +
Sbjct: 147 IKEKSRDIPFI 157
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +2
Query: 281 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.017
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.022
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 281 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 460
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 461 VRL 469
VR+
Sbjct: 135 VRV 137
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 41.1 bits (92), Expect = 0.022
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +2
Query: 329 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 508
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++ S
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWAQGSK 175
Query: 509 SVEVVLDVSRGR 544
E V+D + R
Sbjct: 176 IKEKVVDFTGAR 187
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 41.1 bits (92), Expect = 0.022
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 490
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 491 FSLKSPSVEVV 523
F + VV
Sbjct: 147 FHAAHQKLAVV 157
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.029
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +2
Query: 275 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 454
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 455 F 457
+
Sbjct: 95 Y 95
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.051
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 284 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 463
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 464 R 466
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.051
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.051
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 293 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 460
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.051
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 326 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 469
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.051
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 39.5 bits (88), Expect = 0.067
Identities = 18/77 (23%), Positives = 43/77 (55%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPS 511
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ + G I F S
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV--GDIISFKEGSMK 201
Query: 512 VEVVLDVSRGRTSARDR 562
+++ + +G S + R
Sbjct: 202 RKLLKRLKKGLISKKSR 218
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.088
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +2
Query: 275 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 439
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 440 VNIPSFIV 463
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.12
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 38.3 bits (85), Expect = 0.15
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPS 511
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKAQE 149
Query: 512 VEVVLD 529
+ +VL+
Sbjct: 150 MALVLE 155
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 38.3 bits (85), Expect = 0.15
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 490
G + LERRL V++A ++ AR + H+ V + VNIPS+ R+ G I+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSY--RVKEGDVIE 142
Query: 491 FSLKSPSVEVVLD 529
+S + VL+
Sbjct: 143 VRERSKQLASVLE 155
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 37.9 bits (84), Expect = 0.20
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 329 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 508
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164
Query: 509 SVEVVLDVSRGR 544
+ V+D + R
Sbjct: 165 IKKHVMDYNNTR 176
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.9 bits (84), Expect = 0.20
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPS 511
LE RL V++ G A + AR L+ H V + VNIPS+++R ++ KS
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR--PNDVVEVREKSRD 153
Query: 512 VEVV 523
+EV+
Sbjct: 154 LEVI 157
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.20
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 466
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 37.9 bits (84), Expect = 0.20
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI-DFSLKSP 508
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V + + + S K+
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNS 149
Query: 509 SVEVVLDVS 535
++ L+VS
Sbjct: 150 AIAESLEVS 158
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.20
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 281 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 460
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 461 V 463
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.20
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.27
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 293 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 472
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 473 S 475
S
Sbjct: 142 S 142
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.36
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 305 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 466
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 36.3 bits (80), Expect = 0.62
Identities = 26/80 (32%), Positives = 37/80 (46%)
Frame = +2
Query: 224 EIVRR*CPSTCLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 403
E+ RR S L +GV+D Q LD + L L RRL + K + + I
Sbjct: 72 ELTRR--LSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRF 129
Query: 404 IRQRHIRVRKQVVNIPSFIV 463
++Q H+RV VV P+ V
Sbjct: 130 VKQGHVRVGPNVVVNPALHV 149
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.62
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.82
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 446 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 342
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.82
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 35.5 bits (78), Expect = 1.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L +GV+ + L + + DF RRL V + + A LI+Q HI+V
Sbjct: 82 LYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPD 141
Query: 437 VVNIPSFIV 463
V+ P++IV
Sbjct: 142 VIRNPAYIV 150
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 326 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 469
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 35.5 bits (78), Expect = 1.1
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L +GVL K D + + RRL + + +A++I A I Q H+RV
Sbjct: 82 LYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPN 141
Query: 437 VVNIPSFIV 463
++N P+++V
Sbjct: 142 LINDPAYLV 150
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.5 bits (78), Expect = 1.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 329 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 463
F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 35.1 bits (77), Expect = 1.4
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 266 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 445
+G++ K L+ + F RRL + + +++++ HA +I H+RV VV
Sbjct: 85 LGLIPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVK 143
Query: 446 IPSFIV 463
P+F+V
Sbjct: 144 DPAFLV 149
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.9
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 457
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 314 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 493
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 494 S 496
+
Sbjct: 135 A 135
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 34.7 bits (76), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 111 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 227
I +YGLR++ E + + ++RK A L L+E DP R
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVR 70
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.7 bits (76), Expect = 1.9
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPS 511
+E+RL ++++G K+I AR R I V +V IPS I L+SG I + + S
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISYKNQLDS 257
Query: 512 VE 517
++
Sbjct: 258 LK 259
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 373 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 468
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 33.9 bits (74), Expect = 3.3
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L +G++ KQ L + F RRL + K +A+++ A ++ HIRV +
Sbjct: 38 LYNMGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPE 96
Query: 437 VVNIPSFIV 463
+V P+F+V
Sbjct: 97 LVLDPAFLV 105
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 3.3
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 320 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 481
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_Q6AJU9 Cluster: Related to two-component system response
regulator; n=1; Desulfotalea psychrophila|Rep: Related
to two-component system response regulator -
Desulfotalea psychrophila
Length = 531
Score = 33.9 bits (74), Expect = 3.3
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 448 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFF---- 281
D+H L D P + G Q F HL + + +++ K I+ LFF
Sbjct: 49 DIHILFYDLKFPSETDPITKL-GQLQHKFPHLTIVPLISAGMDILVKEILGLQLFFYIPK 107
Query: 280 -IQYSNTNQTRRRALPSNNL 224
+ YS + T RRAL +N++
Sbjct: 108 PLDYSEVSITVRRALETNSI 127
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.9 bits (74), Expect = 3.3
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 78 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 251
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAIL 669
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.5 bits (73), Expect = 4.4
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +2
Query: 332 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPS 511
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ + L+ G D +PS
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPN--IMLNPG---DVFTVNPS 194
Query: 512 VEVVLDVSRGR 544
V+L + +
Sbjct: 195 QIVMLQAPKSK 205
>UniRef50_A6NRZ3 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 262
Score = 32.7 bits (71), Expect = 7.7
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 93 DQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRV-WFV- 266
+Q ++G YGL + + K LA L+ + DPK L E LRV W+
Sbjct: 153 NQLFDLVGFYGLSDMQLCMYYKELLAEAEGINIRLVFIHANDPKSLLEQTCRLRVGWYTQ 212
Query: 267 LEYWM 281
LE W+
Sbjct: 213 LERWL 217
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 32.7 bits (71), Expect = 7.7
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L +G+++EK + L V + +E F +RRL T + +A + A + H+RV
Sbjct: 128 LYAMGLINEK-LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVRVGTS 186
Query: 437 VVNIPSFIVRLD 472
+ P+F+V D
Sbjct: 187 QIRDPAFLVPRD 198
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,192,173
Number of Sequences: 1657284
Number of extensions: 12047973
Number of successful extensions: 32620
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 31527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32615
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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