Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30514
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 145 4e-36
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 145 5e-36
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 35 0.011
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.57
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 27 1.7
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 3.0
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 7.0
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 9.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.2
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 145 bits (352), Expect = 4e-36
Identities = 67/84 (79%), Positives = 77/84 (91%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ
Sbjct: 80 LVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQ 139
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
+VN+PSF+VRLD+ KHIDF+L SP
Sbjct: 140 IVNVPSFVVRLDAQKHIDFALSSP 163
Score = 121 bits (291), Expect = 1e-28
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 212
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 213 KDPKRLFEGNALLR 254
KDPKRLFEGNA++R
Sbjct: 65 KDPKRLFEGNAIIR 78
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 145 bits (351), Expect = 5e-36
Identities = 67/84 (79%), Positives = 77/84 (91%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ
Sbjct: 80 LVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQ 139
Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
+VN+PSF+VRLD+ KHIDF+L SP
Sbjct: 140 IVNVPSFVVRLDTQKHIDFALSSP 163
Score = 121 bits (291), Expect = 1e-28
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +3
Query: 33 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 212
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 213 KDPKRLFEGNALLR 254
KDPKRLFEGNA++R
Sbjct: 65 KDPKRLFEGNAIIR 78
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
L +G+L K D + RRL + K +++ + A LI Q H+RV
Sbjct: 82 LFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPH 141
Query: 437 VVNIPSFIV 463
V+ P+++V
Sbjct: 142 VITDPAYLV 150
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 319 D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 450
D GLLGA+S GVQS PG P P + P S P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +2
Query: 338 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPSVE 517
R L G+ ++I+ +++L + +RK N+P ++ LD+ + + F + E
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQE 169
Query: 518 VVLDVSRGRTSAR 556
+L G S R
Sbjct: 170 DLLSSRDGEASLR 182
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 290 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 421
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 221 QEIVRR*CPSTCLVRIGVLDEKQMKLDYVLGLKIEDFLERR 343
+E +R S +G++ EK M+LD V G K+E ++RR
Sbjct: 86 KETIRMDSQSEISSTMGLVGEK-MELDAVKGRKVESRVDRR 125
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 335 ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPSV 514
+ L+ V H +R + ++R +VRK++ ++ I RLD + ID L SV
Sbjct: 17 QENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRLD--ERIDSRLTKISV 74
Query: 515 E 517
+
Sbjct: 75 K 75
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 6 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 164
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,508
Number of Sequences: 5004
Number of extensions: 47591
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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