Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30514
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   152   2e-37
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.8  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   3.7  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  152 bits (368), Expect = 2e-37
 Identities = 72/84 (85%), Positives = 80/84 (95%)
 Frame = +2

Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
           LV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+Q
Sbjct: 80  LVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQ 139

Query: 437 VVNIPSFIVRLDSGKHIDFSLKSP 508
           VV++PSFIVRLDS KHIDFSL+SP
Sbjct: 140 VVDVPSFIVRLDSQKHIDFSLQSP 163



 Score =  129 bits (311), Expect = 2e-30
 Identities = 60/76 (78%), Positives = 69/76 (90%)
 Frame = +3

Query: 27  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 206
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 207 EEKDPKRLFEGNALLR 254
           E+KDPKRLFEGNALLR
Sbjct: 63  EDKDPKRLFEGNALLR 78


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +2

Query: 329 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 508
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S 
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164

Query: 509 SVEVVLDVSRGR 544
             + V+D +  R
Sbjct: 165 IKKHVMDYNNTR 176


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 283 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 453
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 446 CSQLACGHEYAFAGSKFWHDG 384
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 449 GCSQLACGHEYAFAGSKFWH 390
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 314  LKIEDFLERRLQTQVFKAG-LAKSIHHARILIRQRHIRVR--KQVVNIPSFIVRLDSGKH 484
            ++I   L+R     + +A  L   +H  +  I  +  R++  K++  +P F+ +++  +H
Sbjct: 803  IEIIRMLDRTQPASIQEANELIDRVHDLQQTIEHKSARIQEVKKMSQVPEFVHKMEEVEH 862

Query: 485  IDFSLKSPSVEV 520
            +   LK  +VE+
Sbjct: 863  VQEQLKHLTVEL 874


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +2

Query: 317 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 442
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +2

Query: 317 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 442
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,003
Number of Sequences: 27780
Number of extensions: 280259
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)