Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30514
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   134   6e-32
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   131   3e-31
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    33   0.12 
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.4  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   4.5  
At1g43730.1 68414.m05028 hypothetical protein                          28   4.5  
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    28   6.0  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   7.9  
At5g28615.1 68418.m03493 hypothetical protein                          27   7.9  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  134 bits (323), Expect = 6e-32
 Identities = 63/82 (76%), Positives = 73/82 (89%)
 Frame = +2

Query: 263 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 442
           R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+V
Sbjct: 84  RYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLV 143

Query: 443 NIPSFIVRLDSGKHIDFSLKSP 508
           NIPSF+VRLDS KHIDF+L SP
Sbjct: 144 NIPSFMVRLDSQKHIDFALTSP 165



 Score =  116 bits (279), Expect = 1e-26
 Identities = 50/71 (70%), Positives = 63/71 (88%)
 Frame = +3

Query: 42  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 221
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 222 KRLFEGNALLR 254
           +R+FEG ALLR
Sbjct: 70  RRIFEGEALLR 80


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  131 bits (317), Expect = 3e-31
 Identities = 61/82 (74%), Positives = 73/82 (89%)
 Frame = +2

Query: 263 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 442
           R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+V
Sbjct: 84  RYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLV 143

Query: 443 NIPSFIVRLDSGKHIDFSLKSP 508
           NIPSF+VR++S KH+DFSL SP
Sbjct: 144 NIPSFMVRVESQKHVDFSLTSP 165



 Score =  119 bits (287), Expect = 1e-27
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = +3

Query: 15  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 194
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 195 LLTLEEKDPKRLFEGNALLR 254
           LLTL+EK+P+R+FEG ALLR
Sbjct: 61  LLTLDEKNPRRIFEGEALLR 80


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 257 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 436
           L  +GV+  ++  L     L +  F  RRL T +     A+    A   I Q H+RV  +
Sbjct: 81  LYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPE 139

Query: 437 VVNIPSFIV 463
            +  P+F+V
Sbjct: 140 TITDPAFLV 148


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 48  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 164
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 286 TDETRLCAWSED*GLLGASSADAGVQSW 369
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 404 SKFWHDGWTSPGQL 363
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -2

Query: 505 RFQREVNVLARVQAHN 458
           RF REVN+++RVQ HN
Sbjct: 62  RFVREVNMMSRVQHHN 77


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 348 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 455
           RRR S  A  S  +   F  G   F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 404 SKFWHDGWTSPGQL 363
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,081
Number of Sequences: 28952
Number of extensions: 264367
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)