Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30513
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      58   1e-08
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      53   3e-07
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      48   9e-06
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       30   2.4  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   4.3  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   5.6  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8)                28   7.5  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   9.9  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 27/75 (36%), Positives = 42/75 (56%)
 Frame = +2

Query: 494 RKYQ*RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDQTIQVPM 673
           +K + +IK+L+     +  T   LVNA+YFKG+W   F+   T    F  +  Q IQV  
Sbjct: 139 QKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQF 198

Query: 674 MYKRGDYKYGESAHL 718
           MY+  +++Y ES+ L
Sbjct: 199 MYQSSEFRYLESSTL 213



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = +3

Query: 255 KAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDV 434
           K   FP D   +     ++ +  +  G ++ MAN+++   G ++ E F   S++ F++++
Sbjct: 58  KTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEM 117

Query: 435 QNIDFSKNTVAAK-SINDWVEENTNNALR 518
             +D+ KN+  A+ ++N WVE+ T + ++
Sbjct: 118 ALVDYVKNSNGARDTVNRWVEQKTKDKIK 146


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 22/64 (34%), Positives = 35/64 (54%)
 Frame = +2

Query: 509 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDQTIQVPMMYKRG 688
           +I DL+ P   +  T   LVNAIYFKG W   F +  +   +F  +    ++V MM+++ 
Sbjct: 107 KICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKS 166

Query: 689 DYKY 700
            +KY
Sbjct: 167 KFKY 170



 Score = 35.1 bits (77), Expect = 0.065
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 339 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNAL 515
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T   +
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 512 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDQTIQVPMMYKR 685
           IK+L+    ++S T  ++VNA+YFKG W  +F E  T    F+V  S +  I+V MM ++
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 339 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNAL 515
           E+++ NK++ HD  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T   +
Sbjct: 54  EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113

Query: 516 R 518
           +
Sbjct: 114 K 114


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
 Frame = +3

Query: 249 AFKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 428
           AF    F  DD +  E  S+++D  +++    K    +      K +E+  + S  +F+ 
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473

Query: 429 DVQNIDFSKNTVAAKSINDW---VEENTNNALR 518
           + +N+DFS +     ++ DW   VE    N+LR
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLEVENTMRNSLR 506


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 391 RILQSFPGTSSIRTSKTLISRRIQSQLS 474
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 67  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 234
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 75  CHCRDGDSKQTNDCL 31
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8)
          Length = 455

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 670 GYLDCLVFAHVEVTVTGQSLVKFR 599
           GYLDC    HV++T TG +  K++
Sbjct: 325 GYLDCDHMRHVKITATGGNQSKYQ 348


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 232 HQKLKLTEREEAAPKMPRGQRFSL 161
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,308,109
Number of Sequences: 59808
Number of extensions: 468322
Number of successful extensions: 1358
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)