Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30512
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   30   1.8  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)                       28   7.1  
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   7.1  

>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 403 EIYEGFLAGQN*TCYKCLRWY 465
           +I +G L GQ   C++CLRW+
Sbjct: 117 DINDGSLCGQTQCCHRCLRWW 137


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 403 EIYEGFLAGQN*TCYKCLRWY 465
           +I +G L GQ   C++CLRW+
Sbjct: 838 DINDGSLCGQTQCCHRCLRWW 858


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 346  EADYWEQMKAKYDPKDEFKEIY-EGFLAG 429
            +AD W  + A YD +D F +IY  G L G
Sbjct: 5963 DADEWYHVAATYDSRDRFAKIYINGELKG 5991


>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
          Length = 382

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 205 RIGRRPLHSRWEGT*SSIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKY 381
           R  R+  H  W    S I          CT+ QK +    ++   +H+A+Y +  KAKY
Sbjct: 221 RKSRKVNHREWRQAPSRIVGTSVQPYGTCTNSQKQNTNSQMQSTYKHKANY-KLAKAKY 278


>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 200 KCVLDEGRCTPDGKELKALSKTECRQRVRSVQINRRC 310
           +CV ++G   P G++ K + K EC +   ++  N RC
Sbjct: 282 RCVCNDGYILPTGRDNKCVDKNEC-EADSTLCTNGRC 317


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +2

Query: 242 ELKALSKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPKMNSKKSTRDS 421
           EL + + T     + + +++    P  S  +LS+  L T    +P+   K+   K   + 
Sbjct: 187 ELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPSTTWKVFRTKVLLER 246

Query: 422 SLVKTKLVINACGGTTE 472
           S+ +    +  C GTTE
Sbjct: 247 SVKEGMYRVQVCSGTTE 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,386
Number of Sequences: 59808
Number of extensions: 355782
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)