Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30512
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   6.3  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical...    28   6.3  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    27   8.3  

>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
            ZK593.4 protein.
          Length = 1477

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +2

Query: 185  LVPYIKCVLDEGRCTPDGKELKALSKTECRQRVRSVQINRRCQPERSLNTLSS-TKLITG 361
            L  ++ C +      P  +EL +    E  Q+  S  +  + +P RS  ++S     IT 
Sbjct: 1317 LFDWLSCEILNPNGLPKARELISEFYMEYLQKQSSAALELKNRPVRSKPSVSLFDPKITA 1376

Query: 362  SR*RPNMIPKMNSKKSTRDSS 424
             R RP++  K  SKKS +  S
Sbjct: 1377 KRKRPSVSHKETSKKSRKRQS 1397


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 253  SIKDGMQTACAKCTDKQ 303
            S+KD +QT C+KC D Q
Sbjct: 1730 SLKDAVQTLCSKCNDVQ 1746


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 344 CCLMCLTIFLADTFCLSVHFAHAVCIPSLIEL*VP 240
           CC++ L + LA  F LS      VC P+     VP
Sbjct: 129 CCILSLVVSLAKLFYLSEDIVLTVCYPTTSMYGVP 163


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 125 KYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELK-ALSKTE-CRQRVRSV 292
           K  DKY  +D+D +  NR  +V  +K  ++   C  D   LK A+   E  ++ VR V
Sbjct: 288 KILDKYAGVDIDVV--NRSRMVEMLKMNMENDACDIDLSTLKIAIGAMELTKKSVRDV 343


>AL032623-18|CAN99758.1|  330|Caenorhabditis elegans Hypothetical
           protein Y43F8B.15 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
 Frame = +1

Query: 289 CTDKQKVSARKIVK---HI-----KQHEADYWEQM----KAKYDPKDE-FKEIYE 414
           CTD QKV   +++    H      KQH  DYW+++       + P DE FK +Y+
Sbjct: 95  CTDSQKVLCNEVIITTFHALFDLKKQHPHDYWKRIILYHTNDFTPTDEQFKRLYK 149


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/90 (23%), Positives = 40/90 (44%)
 Frame = +2

Query: 158 DEILENRKLLVPYIKCVLDEGRCTPDGKELKALSKTECRQRVRSVQINRRCQPERSLNTL 337
           D+I + RK +  Y            D +  ++ S++  R   RS   +R   P R   + 
Sbjct: 488 DQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSS 547

Query: 338 SSTKLITGSR*RPNMIPKMNSKKSTRDSSL 427
           S++   +GS  R +   + +S +  RDS++
Sbjct: 548 SNSSRSSGSSSRSSSSSRKSSPERGRDSNI 577


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/90 (23%), Positives = 40/90 (44%)
 Frame = +2

Query: 158 DEILENRKLLVPYIKCVLDEGRCTPDGKELKALSKTECRQRVRSVQINRRCQPERSLNTL 337
           D+I + RK +  Y            D +  ++ S++  R   RS   +R   P R   + 
Sbjct: 488 DQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSS 547

Query: 338 SSTKLITGSR*RPNMIPKMNSKKSTRDSSL 427
           S++   +GS  R +   + +S +  RDS++
Sbjct: 548 SNSSRSSGSSSRSSSSSRKSSPERGRDSNI 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,502,920
Number of Sequences: 27780
Number of extensions: 274247
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)