Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30511
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 67 3e-12
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 33 0.060
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 30 0.43
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 3.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 4.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 4.0
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 26 5.2
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 26 6.9
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 26 6.9
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 25 9.2
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 9.2
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +3
Query: 294 LYVFTAKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYK 473
LY+ +K + K +FD+DGTLIKTKSG+V D DW PSV KLK + +Y
Sbjct: 56 LYIAKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKLKALYQDNYS 115
Query: 474 IVLFSNQ 494
+V+FSNQ
Sbjct: 116 LVIFSNQ 122
Score = 46.0 bits (104), Expect = 6e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +2
Query: 530 FKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMILTEKKNDGVKVDMNQSFYCGDAA 709
F+ KI +I + L++P+ Y A K +RKP GMW + N +D++ Y GDAA
Sbjct: 135 FQMKIRAIFESLDLPIVLYAAILKDKFRKPLTGMWNSFLKDVNR--SIDLSFIKYVGDAA 192
Query: 710 GR 715
GR
Sbjct: 193 GR 194
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 32.7 bits (71), Expect = 0.060
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +1
Query: 43 DEVYEIGHGSTIEILLNNHVHILEFDPPPESLTTSQNQTFKRKLEDDSTSQRKKSLKVEQ 222
DE+ E+ S+ E ++ +++ E+D +S T+S N+ KR+ +D+ +Q KS K +
Sbjct: 568 DEINEVNDFSSSERIV---INLDEYDIIVDSKTSSHNKQLKRRPSNDTLTQEAKSKKQAK 624
Query: 223 V 225
+
Sbjct: 625 I 625
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 29.9 bits (64), Expect = 0.43
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 73 TIEILLNNHVHILEFDPPPESLTTSQNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKEKVE 252
+I I L N+ ++ E + T + + KRK +++S +KK KVE S K +
Sbjct: 246 SIAIPLWNNPNLKELIASSRKVVTKETASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQ 305
Query: 253 KL 258
+
Sbjct: 306 NV 307
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 752 SDLSFYQGPSLPPFLQHL 699
SDLSF++ PSLP LQ++
Sbjct: 211 SDLSFFRKPSLPSALQNI 228
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 22 DGFALKKDEVYEIGHGSTIEILLN-NHVHILEFDPPPESLTTSQN 153
D + ++++ H S I L + + L FDPPP ++ TS N
Sbjct: 435 DSYFIQRENT-PTNHNSIPTIQLEKSSMDFLRFDPPPSAVKTSHN 478
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 133 SLTTSQNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKEKVEKLL*ICGMK 279
S TT +++KR +E SQR+ ++++ ++ E+ +K + IC +
Sbjct: 1518 STTTLDEESWKRLIESCPASQREYMQRLQKKLVTLAEQDKKRVWICSFR 1566
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 148 QNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKEKVEK 255
+ +TFK DD T +RK+ K ++V + + E+
Sbjct: 420 EQETFKMYKNDDDTKKRKRKKKKKEVKKKARIQGEE 455
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 HILEFDPPPESLTTSQNQTFKRKLEDDSTSQRKKSL-KVEQVSPSVKEKVEKL 258
H+ F E+L T + +S KK L KV + SVKEK+ +L
Sbjct: 9 HLGVFSVDQENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRL 61
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 570 TFNFWTILSIFFLKSSILTLPYQ*GLDC*ITQFCNLFLKILSVFGALK 427
TFN WT LS F + ++L Y + N ++I + A+K
Sbjct: 208 TFNIWTHLSAFIVFFAVLAYFYPSSSSWVSSNVSNRIVRIFFLLSAMK 255
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 9.2
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 10 ASGLDGFALKKDEVYEIGHGSTIEILLNNHVHILEFDPPPESLTTSQNQTFKR--KLED- 180
+ + GFA + ++Y G+GS + +L + E S+ +N K+ KL D
Sbjct: 6 SQSIKGFAARFPKIYNKGNGSVQQTILQASQRLNEL-TGYSSIEALKNAVVKQETKLRDF 64
Query: 181 --DSTSQRKKSLKVEQVSPSVKEKVEKLL 261
+ RK+ ++ + S + +V +LL
Sbjct: 65 RLSAAEARKRYIEAVEKRSSSQREVNELL 93
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 118 DPPPESL-TTSQNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKEKV 249
D PP ++ +TS+ + K+ D STS ++ ++E+ + ++K KV
Sbjct: 663 DQPPVAIPSTSKTGSPWAKVSDVSTSMAQEIQRMEKQNENLKSKV 707
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,753
Number of Sequences: 5004
Number of extensions: 67448
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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