Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30511
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478... 64 9e-11
12_02_0346 - 17776871-17781445 31 1.0
07_01_0084 + 657846-658538,660652-661920 30 1.8
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 29 3.1
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 29 4.1
07_03_1101 + 23967298-23967366,23968918-23969021,23969616-239697... 29 4.1
11_06_0182 + 20997071-20997832,20998010-20998150 29 5.4
11_01_0153 - 1276090-1276182,1276416-1276630,1276710-1276806,127... 29 5.4
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 7.2
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 28 9.5
09_04_0419 + 17411172-17411282,17412634-17413788 28 9.5
>01_06_0634 +
30746767-30747012,30747083-30747118,30747554-30747850,
30748482-30748544,30748643-30748696,30748837-30748854,
30749554-30749625,30749731-30749787,30750160-30750236,
30751013-30751094,30751585-30751701,30752083-30752210,
30753074-30753143,30753725-30753765,30753963-30753990,
30754151-30754210
Length = 481
Score = 64.5 bits (150), Expect = 9e-11
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Frame = +2
Query: 539 KIESIVQKLNVPVQAYIATGKGI--------YRKPRIGMWMILTEKKNDGVKVDMNQSFY 694
+++ ++++ VP+Q +IA G G +RKP GMW ++ E N GV VDM++SFY
Sbjct: 360 RLDKFIERVKVPIQVFIACGLGKGKTFPDDPFRKPNTGMWWLMREHFNSGVTVDMDKSFY 419
Query: 695 CGDAAGRVANWAPGKKKDHSLETL 766
GDAAGR + + K+ + +L
Sbjct: 420 VGDAAGRENDHSDADKEFAKMNSL 443
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = +3
Query: 315 GVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFSNQ 494
G++SS KIA+FD DG L KT V V + W + + S+P+KL+ YK+V+F+N+
Sbjct: 284 GLQSSAKIAAFDFDGCLAKTS---VRIVGADKWSLLYESIPEKLQILYNDGYKLVIFTNE 340
Query: 495 API 503
+ I
Sbjct: 341 SNI 343
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 553 CPKIKCASTSIYSNW*RDLQET*NWNVDDFD 645
CPK+ C+S+S YS + LQ WNV+ +
Sbjct: 1226 CPKLLCSSSSSYSPFPTSLQTLQLWNVEGME 1256
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 659 DGVKVDMNQSFYCGDAAGRVANWAPGKKKDHSLETLFAEI 778
DGV +M F CGD RV + P K++ + + AE+
Sbjct: 151 DGVD-EMRVMFVCGDGGRRVVRYGPAKEEGEGWKEVAAEV 189
>05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 384 KVHPVDINDWQIAFPSVPQKLKEF 455
K HP+D N++ + +P VP++ F
Sbjct: 956 KDHPIDFNNYTVIYPPVPKQTNRF 979
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 37 KKDEVYEIGHGSTIEILLNNHVHILEFDPPPESLTTSQNQTFKRKLEDDSTS 192
K+++V+++ LL ++ D PE L+ S N+T + E STS
Sbjct: 1027 KENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTS 1078
>07_03_1101 +
23967298-23967366,23968918-23969021,23969616-23969716,
23969792-23969858,23969910-23970045,23970470-23970583,
23970649-23970786,23970865-23970949,23971029-23971075,
23971216-23971351,23971396-23971436
Length = 345
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 261 IDMWD--EIDKGELYVFTAKGVKSSDKIASFDMDGT--LIKTKSGKVHPVD 401
I M+D +KG +F+ S + F DG L+ TK+G+VH +D
Sbjct: 187 IRMFDARNFEKGPFDIFSVGNDDSEANVIKFSSDGRRLLLTTKAGRVHVLD 237
>11_06_0182 + 20997071-20997832,20998010-20998150
Length = 300
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 327 SDKIASFDMDGTLIK-TKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIV 479
SD F DG L T G++H D+ D ++A V K+K+FL ++ IV
Sbjct: 152 SDYEDCFFKDGLLYAATLLGEIHMFDLTDPKVAPKIVMGKVKDFLYENIYIV 203
>11_01_0153 -
1276090-1276182,1276416-1276630,1276710-1276806,
1276880-1277077,1277266-1277328,1277628-1277687,
1277826-1277928,1280045-1280154
Length = 312
Score = 28.7 bits (61), Expect = 5.4
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Frame = +3
Query: 138 NYLTESDIQKEIGR*QYISEKEIIKS-----GTSVTKCKRKS*KVIIDMWDEIDKGELYV 302
NY SD KEI Q +S K ++KS G S C R+ +D+ +
Sbjct: 35 NYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVDV--------AVL 86
Query: 303 FTAKGVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEK 464
F ++SSD D TL+ T +++ +AFP + + LEK
Sbjct: 87 FLGSKLQSSDISKDKQADSTLVDTLKNSFAS---SEFSMAFPYIAMSDDDKLEK 137
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 287 FVYFIPHIYNNFSTFSFTLGDTCSTFNDF 201
F+Y + HIY+ FS+F F S+ N F
Sbjct: 635 FIYNLMHIYDLFSSFQFQHDRVLSSLNRF 663
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 121 PPPESLTTSQNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKEKVE 252
PPPE + S N + +D + ++SL VE+V + + E
Sbjct: 609 PPPEGVELSSNGAPDSSIAEDKPDEPEESLIVEEVPVTASSESE 652
>09_04_0419 + 17411172-17411282,17412634-17413788
Length = 421
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 330 DKIASFDMDGTLIKTKSGKVHPVDIND 410
D I +FD LI KSG+VH +D D
Sbjct: 101 DNIVAFDFSPFLILYKSGRVHRMDGTD 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,867,153
Number of Sequences: 37544
Number of extensions: 386839
Number of successful extensions: 869
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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