Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30511
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87)                   52   4e-07
SB_38874| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   4e-07
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)                 31   1.0  
SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)                 31   1.0  
SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12)                   30   2.4  
SB_16229| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_33672| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_57619| Best HMM Match : DUF229 (HMM E-Value=0)                      28   9.7  
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)           28   9.7  

>SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87)
          Length = 267

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +2

Query: 512 RVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMILTEK 652
           +V + DFK KI+ I+  L VP Q  I+ G G YRKP  GMW  L EK
Sbjct: 215 KVSVPDFKVKIQRILDLLGVPTQVLISPGTGHYRKPCTGMWKYLLEK 261



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +3

Query: 270 WDEIDKGELYVFTAKGVKSSDKIASFDMDGTLIKTK 377
           W EI  GEL VFT+KGV+   KI  F     + K K
Sbjct: 181 WSEIP-GELLVFTSKGVEGRKKIVFFTNQNGIAKKK 215


>SB_38874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +2

Query: 512 RVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMILTEK 652
           +V + DFK KI+ I+  L VP Q  I+ G G YRKP  GMW  L EK
Sbjct: 14  KVSVPDFKVKIQRILDLLGVPTQVLISPGTGHYRKPCTGMWKYLLEK 60


>SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/47 (51%), Positives = 29/47 (61%)
 Frame = +2

Query: 512 RVKIEDFKKKIESIVQKLNVPVQAYIATGKGIYRKPRIGMWMILTEK 652
           +V + DFK KI+ I+  L VP Q  I+ G G YRKP  GMW  L EK
Sbjct: 240 KVSVPDFKVKIQRILDLLGVPTQVLISPGTGHYRKPCTGMWKYLLEK 286


>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
          Length = 475

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +1

Query: 13  SGLDGF-ALKKDEVYEIGHGSTIEILLNNHV-HILEFDPPPESLTTSQNQTFKRKLEDDS 186
           SG + F AL+KDE  E+  G  I +L + HV  I+  +P   S   +       K    S
Sbjct: 121 SGREKFSALRKDESQELKTGDLISLLPDQHVFEIISINPNTHSTAVNNGALTDEKTLAGS 180

Query: 187 T--SQRKKSLKVEQVS 228
           T  SQ +K +  E+ S
Sbjct: 181 TEKSQEEKVVSPEEDS 196


>SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)
          Length = 520

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +1

Query: 139 TTSQNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKEKVEKLL*ICGMK*TKVNCM 300
           +++Q    +RKL++DS SQR  +   +  + ++ E +E+     G + TK+ C+
Sbjct: 130 SSAQAAAIERKLKEDSESQRNATDAEQNTAQAIAEPMEQNATNAGKEITKLECV 183


>SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12)
          Length = 885

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 263 YNNFSTFSFTLGDTCSTFNDFFL*DVLSSSN 171
           + NF++F    GDTC TFN      +LS SN
Sbjct: 248 WKNFTSFKSADGDTCYTFNSGRKDPILSMSN 278


>SB_16229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = +3

Query: 186 YISEKEIIKSGTSVTKCKRKS*KVIIDMWDEIDKGELYVFTAKGVKSSDKIASFDMDGTL 365
           YIS    +K     T C+ +S  VII + +  + G   V+    V+S+  I +    GTL
Sbjct: 370 YISFSITVKPW-KCTACQDRSRSVIIIIRNWGNGGRALVWLDDDVESARDITNAHEFGTL 428

Query: 366 IKTKSGKVHP 395
           + T SG+V P
Sbjct: 429 LYTVSGRVRP 438


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 315 GVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFSNQ 494
           G K ++     D+  TL+ TK     PV++ D +   PS   K+KE  E D+  V+ S Q
Sbjct: 518 GEKETETNGDDDVVITLVTTKDAMRGPVEVIDVEDFIPSTGIKIKEEPE-DHPTVIASTQ 576


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 118 DPPPESLTTSQNQTFKRK-LEDDSTSQRKKSLKVEQVSPSVKEKVE 252
           + PP S+   + QT +++ LED+   + ++  ++E+V  ++ E  E
Sbjct: 54  EKPPNSVAEERQQTEEQQQLEDEKRKEEERQREIEEVQQAINEAQE 99


>SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +3

Query: 156 DIQKEIGR*QYISEKEIIKSGTSVTKCKRKS*KVIIDMWDEIDKGELYVFTAKGVKSSDK 335
           +I+K     Q  S + +++S  + T C +   +++ + W+EI   ++  F     KS +K
Sbjct: 10  NIRKIAKNKQVTSRQNVLQS--TATLCIQIILRILANKWNEILTNDVNSFRPVTAKSDEK 67

Query: 336 IASFDMDGTLIK 371
           IA  D   T +K
Sbjct: 68  IAEADRKFTSLK 79


>SB_33672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 132 KLNYLTESDIQKEIGR*QYISEKEIIKSGTSVTKCKR 242
           K NY+  SD+Q+     +YI E    K G +VT+  R
Sbjct: 238 KFNYIFSSDLQRAYKTAEYILEVNKYKDGLAVTRDPR 274


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 139 TTSQNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKE 243
           TT +NQ   +KL+   T Q++ S KVE + P   E
Sbjct: 256 TTPENQESAKKLKMSDTPQKEISPKVEVIIPETPE 290


>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 145  SQNQTFKRKLEDDSTSQRKKSLKVEQVSPSVKEKVEKLL 261
            +  ++ KRK+E+D    +KK  K+E  + ++ ++ + LL
Sbjct: 1067 THKESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLL 1105


>SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 284 VYFIPHIYNNFSTFSFTLGDTCSTFNDFFL*DVLSSSNFLLNV*F-CEVVKLSGGGSNSS 108
           + F   I N+     F L D       FF+ ++    N L+ V     V  L GGG NSS
Sbjct: 67  IAFFSLIGNSIVCIVFCLYDQLRLVKHFFVVNLAVVDNILVTVSIPLFVAFLLGGGQNSS 126

Query: 107 IC 102
           +C
Sbjct: 127 LC 128


>SB_57619| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 616

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 285 KGELYVFTAKGVKSSDKIASFDMDGTLIK 371
           KGE+ VF  KG+K   K+  FD+ GT ++
Sbjct: 72  KGEVLVFGLKGIKG--KVLVFDLKGTNVQ 98


>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
          Length = 1224

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -1

Query: 733  RGPVCHPSCSISTIKTLVHINFDTIIFLFSQNHPHSNSRFPVNPFT 596
            +G V  P      +  L ++ +  + ++F +NHPH+    P    T
Sbjct: 927  KGTVSAPGLVTGCMVPLPYLCYRLVRYIFEKNHPHAGGNTPEGSHT 972


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,026,985
Number of Sequences: 59808
Number of extensions: 459625
Number of successful extensions: 1079
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)