Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30511
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 370 LIRVPSISKDAILSLDFTP 314
           L+R  ++ K+AI+++D TP
Sbjct: 90  LVRTKTLVKNAIVTIDATP 108


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 19  LDGFALKKDEVYEIGHGSTIEILLNNHVHI 108
           LDGFAL  +  + IG   T+   + +HV+I
Sbjct: 457 LDGFALPTNGRFMIGQYVTVHGDVISHVNI 486


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 19  LDGFALKKDEVYEIGHGSTIEILLNNHVHI 108
           LDGFAL  +  + IG   T+   + +HV+I
Sbjct: 457 LDGFALPTNGRFMIGQYVTVHGDVISHVNI 486


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 349 SKDAILSLDFTPLAVNTYNSPL 284
           ++D I  +  +P+  N Y SPL
Sbjct: 250 AQDGIFGMALSPMTNNLYYSPL 271


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +1

Query: 94  NHVHILEF----DPPPESLTTSQNQTFKRKLEDDSTSQRKKSLKVEQVSP 231
           +H+H+ +     +PP  S +++ +   K  L     SQ   +  V QVSP
Sbjct: 342 HHLHVAKQMASPEPPKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSP 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,239
Number of Sequences: 438
Number of extensions: 4469
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)