Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30511
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest...    64   7e-11
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest...    64   7e-11
At4g26630.1 68417.m03837 expressed protein                             29   2.6  
At5g22120.1 68418.m02575 expressed protein                             29   3.4  
At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    29   3.4  
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ...    29   4.5  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   6.0  
At4g15810.1 68417.m02406 chloroplast outer membrane protein, put...    28   6.0  
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    28   7.9  

>At3g14890.2 68416.m01883 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 638

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 10/69 (14%)
 Frame = +2

Query: 539 KIESIVQKLNVPVQAYIATG------KG----IYRKPRIGMWMILTEKKNDGVKVDMNQS 688
           ++ S ++++ VP+Q +IA G      KG    +YRKP+ GMW ++ +  N G+ +DM++S
Sbjct: 535 RLNSFIERVKVPIQVFIACGVSSSGGKGGKDDLYRKPKAGMWQLMKKHFNSGIAIDMDKS 594

Query: 689 FYCGDAAGR 715
           FY GDAAGR
Sbjct: 595 FYVGDAAGR 603



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 26/63 (41%), Positives = 42/63 (66%)
 Frame = +3

Query: 315 GVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFSNQ 494
           G+  S+KIA+FD DG L KT    V  V  + W + +PS+P+KL+   ++ YK+V+F+N+
Sbjct: 459 GLNDSEKIAAFDFDGCLAKTS---VKIVGADAWSLMYPSIPEKLQSLHDQGYKLVIFTNE 515

Query: 495 API 503
           + I
Sbjct: 516 SNI 518


>At3g14890.1 68416.m01882 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 694

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 10/69 (14%)
 Frame = +2

Query: 539 KIESIVQKLNVPVQAYIATG------KG----IYRKPRIGMWMILTEKKNDGVKVDMNQS 688
           ++ S ++++ VP+Q +IA G      KG    +YRKP+ GMW ++ +  N G+ +DM++S
Sbjct: 591 RLNSFIERVKVPIQVFIACGVSSSGGKGGKDDLYRKPKAGMWQLMKKHFNSGIAIDMDKS 650

Query: 689 FYCGDAAGR 715
           FY GDAAGR
Sbjct: 651 FYVGDAAGR 659



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 26/63 (41%), Positives = 42/63 (66%)
 Frame = +3

Query: 315 GVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAFPSVPQKLKEFLEKDYKIVLFSNQ 494
           G+  S+KIA+FD DG L KT    V  V  + W + +PS+P+KL+   ++ YK+V+F+N+
Sbjct: 515 GLNDSEKIAAFDFDGCLAKTS---VKIVGADAWSLMYPSIPEKLQSLHDQGYKLVIFTNE 571

Query: 495 API 503
           + I
Sbjct: 572 SNI 574


>At4g26630.1 68417.m03837 expressed protein
          Length = 763

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 124 PPESLTTSQNQTFKRKLEDDS------TSQRKKSLKVEQVSPSVKEKVEK 255
           PPE +T  ++   ++K +DDS      +S+RKKS    + SP+  +   K
Sbjct: 614 PPEKITQKRSSAKRKKTDDDSDTSPKASSKRKKSENPIKASPAPSKSASK 663


>At5g22120.1 68418.m02575 expressed protein
          Length = 383

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +3

Query: 309 AKGVKSSDKIASFDMDG----TLIKTKSGKVHPVDINDWQIAFPSVPQKL 446
           + G+KS   ++SFD DG    + + + +   H    +DW+      P KL
Sbjct: 119 SSGLKSDPNVSSFDADGKTEDSKVSSSNSAAHDSSDDDWEALADVEPSKL 168


>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 10  ASGLDGFALKKDEVYEIGHGSTIEILLNNH-VHILEFDPPPESLTTSQNQTFKRKLEDDS 186
           +SGL+     + +V   G     E+LL        + D   E     + +T + K+  + 
Sbjct: 336 SSGLNNVVKPRPKVNPFGDAKPREVLLEEQGKDWRKMDLELEHRRVDRPETEEEKMLKEE 395

Query: 187 TSQRKKSLKVEQVSPSVKE 243
             + +K L+ E V+P +KE
Sbjct: 396 IEELRKKLEKESVAPEIKE 414


>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 530

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 643 QNHPHSNSRFPVNPFTSCYICLYWHI*FLDNTFNLLFKVF 524
           ++HPH  S FP    T C+IC    I  LD T+  +  VF
Sbjct: 88  KSHPHPLSFFPTQASTVCHICA--KIKHLDPTYICIQCVF 125


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +3

Query: 315 GVKSSDKIASFDMDGTLIKTKSGKVHPVDINDWQIAF----PSVPQKLKEFLEKDYKIVL 482
           G+   +  +S  +  T+I   SGK  PVD N+W           P K+    E+D + + 
Sbjct: 694 GISKLEVQSSLSLPITIID--SGKCLPVDANEWNRKLDKQQEKAPSKIDLLDERDCRELK 751

Query: 483 FSNQAPIG 506
              + PIG
Sbjct: 752 IDGELPIG 759


>At4g15810.1 68417.m02406 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 898

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 52  YEIGHGSTIEILLNNHVHILEFDPPPESLTTSQNQTFKRKLEDDSTSQRKKSLKVEQVSP 231
           Y+I    T+  L++NH   +E D    +  TS+  T       +S+     +  VE +S 
Sbjct: 478 YDIMENETMARLIHNHT-FMELDEYEGTGDTSEKLTGSSF--QNSSELLSSNHSVELISE 534

Query: 232 SVKEKVEK 255
            VKE+VEK
Sbjct: 535 RVKERVEK 542


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
           putative similar to SP|O04379 Argonaute protein (AGO1)
           {Arabidopsis thaliana}; contains Pfam profiles PF02170:
           PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 572 PVQAYIATGKGIYRKPRIGMWMILTEKKNDGVKV 673
           P+  Y  +GK     PR+G W ++ +K  +G KV
Sbjct: 538 PMLKYHDSGKEKMVNPRLGQWNMIDKKMVNGAKV 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,586,085
Number of Sequences: 28952
Number of extensions: 340699
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)