Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30510
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 36 0.034
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) 34 0.14
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 33 0.32
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 32 0.56
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13) 31 0.74
SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98) 31 0.97
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 0.97
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 30 1.7
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 30 1.7
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 30 2.3
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 30 2.3
SB_35998| Best HMM Match : SURF6 (HMM E-Value=4.8) 29 3.0
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 29 5.2
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 29 5.2
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 29 5.2
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 29 5.2
SB_20788| Best HMM Match : IATP (HMM E-Value=4.8) 29 5.2
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 28 6.9
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 28 6.9
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.9
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 28 9.1
SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6) 28 9.1
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 28 9.1
SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019) 28 9.1
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 28 9.1
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_35420| Best HMM Match : Not3 (HMM E-Value=6) 28 9.1
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043) 28 9.1
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +3
Query: 3 DVIETTNFNGKRSPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKI 182
D+++ N + P G+++ Q G +K D +++KPD EK + + +K
Sbjct: 807 DMVQEKQDNEQEKPDKGEEKQDQEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQ 866
Query: 183 SPKPIQEEKP 212
+ ++EKP
Sbjct: 867 EKQDREQEKP 876
>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
Length = 722
Score = 33.9 bits (74), Expect = 0.14
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 194 NTGGEALVGDQQEFKEGDVRTRSFSSKKIEPEKPKYRAPSPSKVI---SKPLDVITSSYG 364
+T L GD+ K+ RTR + P KP +P PSK + + +D + S
Sbjct: 432 STSSSELTGDRLAVKQSSPRTRRANKSLQAPLKPPSSSPRPSKALTGSASGIDYYSKSLP 491
Query: 365 PGPLDADGKPL 397
P P + +G PL
Sbjct: 492 PLPQE-EGIPL 501
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 24 FNGKRSPSPGKKQSPQRTGSFEK-RSPSPDLKRQKPDTKKEKIIKTVYEV-EKKISPKPI 197
F+ +P PGK SPQ R S + TK + ++ + +E KI PKP
Sbjct: 1490 FSNSLNPIPGKPTSPQLVKEQNSTRQESSNKATVTTSTKTDSLLSSSFEFGASKIEPKPP 1549
Query: 198 QEE--KPSWVTNRNLK 239
E KP + N N+K
Sbjct: 1550 PSESAKPKLI-NHNIK 1564
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 31.9 bits (69), Expect = 0.56
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +3
Query: 30 GKRSP-SPGKKQSPQRTGSFEKR--SPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQ 200
GK+ P S KK P++ S +KR SPSP + T+K K + + S P
Sbjct: 1907 GKQKPGSATKKTKPKQDSSKKKRKRSPSPPTSASREGTRKAKRPRLTDSAKSSRSASP-- 1964
Query: 201 EEKPSWVTNRNLKKVTSERGVS-VRKKLSRKN 293
KP + + S R S VRK +R++
Sbjct: 1965 ATKPVKRVAKGIGSADSSRSPSPVRKATARRD 1996
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 30 GKRSP-SPGKKQSPQRTGSFEKR--SPSPDLKRQKPDTKKEK 146
GK+ P S KK P++ S +KR SPSP + T+K K
Sbjct: 1798 GKQKPGSATKKTKPKQDSSKKKRKRSPSPATSASREGTRKAK 1839
>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
Length = 440
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 117 RQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVTNRNLKKVTSERGVSVRKKLS 284
+Q+P+ K + T+ + IS P +E P+ T + K +S SV KLS
Sbjct: 83 KQEPEKTDTKTMSTISSITDIISQIPGMQESPASTTEESSPKPSSSNSSSVVSKLS 138
>SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98)
Length = 809
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 27 NGKRSPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQ 200
NGK P ++ PQ+T S S +P + +K KKE+I + V E K P+ ++
Sbjct: 566 NGKAVEKPREESIPQQTTSKRDESKTPS-QHRKQQEKKEQIKEMV--AETKCKPRQLE 620
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 54 KKQSPQRTGSFEKRSPSPD--LKRQKPDTKKE-KIIKTVYEVEKKI-SPKPIQEEK 209
KK+ PQ F+ P P+ K ++P K+E KI + E E KI P+P +E K
Sbjct: 548 KKEQPQPEEEFKTEQPQPEEKFKTEQPQPKEEVKIEQPQPEEEFKIEQPQPKEEVK 603
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 12 ETTNFNGKRSPSPGKKQSPQRTG--SFEKRSPSPDLKRQKPDTKK 140
+T KR PSPG +S + S KRSPSP +Q+ D K
Sbjct: 3141 DTPRSKTKRRPSPGPIESSVKRSEKSTPKRSPSPAAGKQRGDEAK 3185
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 114 KRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVTNRNLKKVTSERGV-SVRKKLSRK 290
K Q+ D+KK+ ++ T EVE +E +P N+ K V E+ V R++L +
Sbjct: 1525 KMQRSDSKKKLLVPTKLEVEVSEQKIDEEENEPRACVNKLDKPVLMEKDVEEERRRLEEE 1584
Query: 291 NR 296
R
Sbjct: 1585 RR 1586
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +3
Query: 45 SPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVT 224
SP KK+ +R S E+RSP +K +K ++ E E+ SP+P E+P
Sbjct: 108 SPPKKKRKRRVES-EERSPFKSRHSKKGKERKGELPGRSMEEER--SPEPPAREEPRREN 164
Query: 225 NRNLKKVTSERGVSVRKKLSR 287
R K +SE + + K R
Sbjct: 165 ARRRKDSSSENERANKPKTRR 185
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 33 KRSPSPGKKQSPQRTGSFEKRSPSPDLKR-QKPDTKKEKIIKTVYEVEKKISP 188
+RSP P ++ P+R + ++ S + +R KP T++ + + ++ SP
Sbjct: 149 ERSPEPPAREEPRRENARRRKDSSSENERANKPKTRRSETRSSRQSNQRSSSP 201
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 30.3 bits (65), Expect = 1.7
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = +3
Query: 12 ETTNFNGKRSPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPK 191
++ N + KRSP K SP K SP LK + K + T + +K S K
Sbjct: 144 KSRNTSPKRSPKTSSKSSP-------KTSPKTSLKTSSKTSPKTS-LNTSRKTSRKTSLK 195
Query: 192 PIQEEKPSWVTNRNLKKVTS-ERGVSVRKKLSRK-NRNTGLPVPLKSYL 332
+ K S T+ TS E + R K SRK + T L LK+ L
Sbjct: 196 --RSLKTSTKTSLKTNPTTSPEISLKTRWKTSRKTSPKTSLKTSLKTSL 242
>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 29.9 bits (64), Expect = 2.3
Identities = 30/98 (30%), Positives = 45/98 (45%)
Frame = +3
Query: 36 RSPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPS 215
+SP ++S R S + SP K K +K K+I+ E +K+I+ EEK
Sbjct: 178 KSPIRQIRESVSRNNS--ELSPK---KEHKEIEEKHKVIRVKVESKKQITEPQRLEEK-- 230
Query: 216 WVTNRNLKKVTSERGVSVRKKLSRKNRNTGLPVPLKSY 329
+K T RGVS K+ K +++ PV SY
Sbjct: 231 ---EEKQRKRTKSRGVSPNKEPKPKKKSSE-PVQNPSY 264
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 54 KKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKP 212
KK ++ E D K +KP TKK + KTV++ E+ + KPI KP
Sbjct: 283 KKDEDKKDDDVEVEEDKDD-KEKKPKTKK--VEKTVWDWEQLNTNKPIWTRKP 332
>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Frame = +3
Query: 27 NGKRSPSPGKKQSPQRTGSFEKRSPSPD----LKRQKPDTKKEKIIKTVYEVEK------ 176
N +RSP+P SP R RSPS + KR++ +E+ I Y VE+
Sbjct: 120 NPRRSPAP--YNSPSRRSKSTSRSPSKERWSKFKRERVVAYEERNIAVEYRVERGVDVNM 177
Query: 177 KISPKPIQEEKPSWVTNRNL 236
+IS +P S NR L
Sbjct: 178 EISHRPRTNSSSSDNNNRQL 197
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +2
Query: 149 NKNSL*SRKEDFT*TNTGGEALVGDQQEFKEGDV----RTRSFSSKKIEPEKPKYRAPSP 316
NK SR+++F +T E D+ E GD + S +++K R+ P
Sbjct: 1054 NKGRGKSRRKEF---DTSSEEEQSDEDESSSGDEVIPEKRASGTARKTRNSLQTTRSSKP 1110
Query: 317 SKVISKPLDVITSSYGPGP--LDADGKPLFG 403
SKV DV+ PGP ++ +G P G
Sbjct: 1111 SKVEIDGEDVVEVDAKPGPSGVELNGDPALG 1141
>SB_35998| Best HMM Match : SURF6 (HMM E-Value=4.8)
Length = 279
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/83 (31%), Positives = 37/83 (44%)
Frame = +3
Query: 54 KKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVTNRN 233
K PQ T S K + P + KP KKEK +V KK + +KP
Sbjct: 76 KNDKPQETRSTVK-TVKPAVTEDKPKKKKEKSAVKEDKVTKKGRNPVSKADKPKEKATIA 134
Query: 234 LKKVTSERGVSVRKKLSRKNRNT 302
KK +++G +K + RK R+T
Sbjct: 135 TKK--ADKG---KKTVERKTRST 152
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 36 RSPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPS 215
+ P+ K +SP++ + + S K +KP KK KK+S KP ++ P
Sbjct: 582 KKPAAKKAKSPKKKAAKKPAKKSTPKKAKKPAAKKS---------PKKLSKKPAAKKTPK 632
Query: 216 WVTNRNLKKVTSER 257
V + K +S++
Sbjct: 633 KVAKKPAAKKSSKK 646
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 593 RPSPRPGSLVETPVLLFTKHTGMNSAQS*ISSPRTTDESQTLV*TS 730
RP PRP S T FT T ++ S +SP +T + + TS
Sbjct: 129 RPPPRPASTSLTTSAAFTSSTSSAASTSLTTSPVSTSSTSSAASTS 174
>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 27 NGKRSPSPGKKQSPQRTGSFEKRSPSPDLKRQK-PDTKKEKIIKTVYEVEKKISPKPIQE 203
NG +PSP K + + T S E P Q P +K + K KP+QE
Sbjct: 804 NGNETPSPDTKDNTEGTTSPEVPVRKPGHSYQNFPFSKAGSVEKPSKPERGSKCSKPVQE 863
Query: 204 EKP 212
KP
Sbjct: 864 VKP 866
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 33 KRSPSPGKKQ-SPQRTGSFEKRSPSPDLKRQKPD-TKKEKIIKTVYEVEKKIS 185
K +PSP KKQ +P++T + K + P+ K+E+ I T +EKK S
Sbjct: 29 KSTPSPIKKQVTPKKTTPVKALKEPESKKARTPEKIKQEETIATPSSLEKKKS 81
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 33 KRSPSPGKKQSPQRTGSFE-KRSPSPDLKRQKPDTKKEKI---IKTVYEVEKKISPKPIQ 200
K SP K SP+ + K S L + +++ + +KT + +K SPK
Sbjct: 139 KTSPKSSPKTSPKTSSKTSLKTSQKTSLNASRKTSRRTSLKRSLKTSPKTSRKTSPKTSP 198
Query: 201 EEKP 212
+EKP
Sbjct: 199 DEKP 202
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Frame = +3
Query: 54 KKQSPQRTGSFEKRSPSPDLKRQ-KPDTKKEKIIKTVYEVEKKISPKPIQEEKP------ 212
K + + EK P+ K + KP+ K E ++ E + + PK Q+ KP
Sbjct: 5 KSEDKPEDNADEKPEDKPEDKPEDKPEDKSEDRLEDKPEDKLEDKPKENQQNKPEDKQQT 64
Query: 213 SWVTNRNLKKVTSER-GVSVRKKLSRK 290
S T+R K TS++ ++ +K SR+
Sbjct: 65 SPKTSRKTSKKTSQKTSLNASRKTSRR 91
>SB_20788| Best HMM Match : IATP (HMM E-Value=4.8)
Length = 336
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 60 QSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVTN 227
+S + + +K S SPD+KR K T++ ++ + V I + + P+ T+
Sbjct: 228 RSEPKAQASDKNSDSPDMKRPKKCTEQGNLVSSKPTVSPTIGDNVLHAQAPNTSTD 283
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 87 EKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVTNRNLKKVTSERG 260
EK+ PS R K K T VE+ +P++E S + KK T RG
Sbjct: 1119 EKKLPSRGSGRGKATRGKNNEATTAENVEEMTKEEPVEEGTTSLTEDDTGKKSTRRRG 1176
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 348 ITSKGLDMTLEGLGARYFGFSGSIFFELKLRVLTSPSLNSCWSPTR 211
+ K LD L LGA+ F +G + L ++ P ++ W P +
Sbjct: 109 VNGKNLDRRLNELGAKKFYDTGHADDAVGLELVVEPWIDGLWGPLK 154
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 36 RSPSPGKKQSPQRTGSFEK---RSPSPDLKRQKPDTKKEK 146
RS SP ++ S R+ + + RS SP+ K+ K KKEK
Sbjct: 261 RSRSPRRRHSRSRSPTHRRHRSRSHSPEKKKHKKKEKKEK 300
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +3
Query: 54 KKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVTNRN 233
+++ +R + EK++ + +R + + KKE+ K EK++ + I+ EK R
Sbjct: 319 EEEEQKRKEAEEKKAKEIEQRRMEEEIKKEEEKKRKEAEEKRVKEEQIRLEK-----ERK 373
Query: 234 LKKVTSERGVSVRKKLSRKNRNTG 305
K+ + RK+ K + G
Sbjct: 374 RKEADDRQREEARKEEEEKRKREG 397
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 36 RSPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKI--IKTVYEVEKKI-SPKP-IQE 203
R+P KQ+ ++ +R+ S +LKR+ P+ K++ + KT+ ++ SPKP I
Sbjct: 911 RAPGVSAKQAVKKL--VHERTKSAELKREAPERKQKTMENAKTLEKIPSNFPSPKPKITP 968
Query: 204 EKP 212
KP
Sbjct: 969 TKP 971
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 348 ITSKGLDMTLEGLGARYFGFSGSIFFELKLR--VLTSPSLNSCWSPTRASPP 199
++S +D L+ LG FG GS F ++ V SPS S SP+R PP
Sbjct: 508 LSSPKIDPLLDSLG---FGALGSSFANTEISNVVAKSPSGYSATSPSRRLPP 556
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = +3
Query: 39 SPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSW 218
SP G+ SP++TG EK+ + Q P E +SP+ QE P
Sbjct: 1967 SPPKGRPSSPKKTG--EKKKEAEKAPTQDPSAPPVS--------ETAVSPEERQEPHPPA 2016
Query: 219 VTNRNLKKVTSERGVSVRKKLSRKNRNT 302
V + +L ++ + +K S + R T
Sbjct: 2017 VNDADLSHAQEQQEAPL-QKTSEETRTT 2043
>SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)
Length = 147
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 87 EKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKP--IQEEKPSWVTNRNLKKVTSERG 260
++R PS + +PD +E ++ ++ ++ KP + E KPS + K T R
Sbjct: 24 DQRVPSVN---NEPDVARESLVDKTNKLRAELGLKPLVVDEPKPSPKSPTKSKSQTDSRP 80
Query: 261 VSVRKKLSRKNRN 299
S +LS N
Sbjct: 81 SSSSSRLSETRSN 93
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 27.9 bits (59), Expect = 9.1
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +3
Query: 9 IETTNFNG-KRSPSPGKKQSPQRTGSFE---KRSPSPDLKRQKPDTKKEKIIKTVYEVEK 176
+E N++G K P GK+ Q F KR L R+ P +E +Y +
Sbjct: 3 LELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNP---REVTWTVLYRRKH 59
Query: 177 KISPKPIQEEKPSWVTNRNLKKVTSERGVSVRKKLSRKNR 296
K K QEE T RN+K S +G S+ L+++N+
Sbjct: 60 K---KGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQ 96
>SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)
Length = 696
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 406 YPEEWFSICI*WSGPIARRDHIQRLRYDF 320
YP E F + + S PIA+ I R+RYDF
Sbjct: 144 YPREPFEVNL--SVPIAKDSFITRIRYDF 170
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = +3
Query: 39 SPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSW 218
SP G+ SP++TG EK+ + Q P E +SP+ QE P
Sbjct: 825 SPPKGRPSSPKKTG--EKKKEAEKAPTQDPSAPPVS--------ETAVSPEERQEPHPPA 874
Query: 219 VTNRNLKKVTSERGVSVRKKLSRKNRNT 302
V + +L ++ + +K S + R T
Sbjct: 875 VNDADLSHAQEQQEAPL-QKTSEETRTT 901
>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 42 PSPGKKQSPQRTGSFEKRSP-SPDLKRQKPD 131
P+PG+ QS ++ GSF R+P +P L ++ D
Sbjct: 841 PTPGRTQSVKKKGSFLSRTPITPRLMFREAD 871
>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3
Query: 588 PGGHHHDQEVWWRHRYFYSRSTRE*TARSPRSVHPERQTSLRH*SRHHE 734
P G HH++E H E A P H E + + +HHE
Sbjct: 122 PPGQHHEEEERGAHPPGQHHEEEERGAHPPGQHHEEEERGVHPPGQHHE 170
>SB_35420| Best HMM Match : Not3 (HMM E-Value=6)
Length = 392
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 54 KKQSPQRTGSFEKRSPSPD----LKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWV 221
K +PQ+ G+ K PSP + + K K+ K + ++K+ K ++ K
Sbjct: 148 KSANPQKLGTKTKTEPSPPKVNFIDKNKEVGKRTKGGSYAAKFQQKVKLKYDKDFKGHST 207
Query: 222 TNRNLKKVTSER 257
T NL + TSE+
Sbjct: 208 TTNNLLEETSEQ 219
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +2
Query: 257 RSFSSKKIEPEKPKYRAPSPSKVISKPLDVITSSYGPGPL---DADGKPLFGIKALKKG 424
R F P P YR P P + + P S GP + D + L +KA++KG
Sbjct: 480 RGFPPPPFGPPPPFYRGPPPPRGMPPPPRQRMPSQGPPQVHYPSQDPQRLGAVKAMEKG 538
>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
Length = 831
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 138 KEKIIKTVYEVEKKISPKPIQEEK-PSWVTNRNLKKVTSERGVSVRKKLSRKNRNTGLPV 314
+EK++ T+ EVE+ +S I++ P + N LK + E + + + P
Sbjct: 45 REKLLATIPEVERALSATKIKKAPGPDGIPNTILKTFSFELAPVICDLYNSSLTDGFFPS 104
Query: 315 PLKSYLS 335
PLKS ++
Sbjct: 105 PLKSAIA 111
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 30 GKRSPSPGKKQSPQRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQE 203
G R SPG+++ R G RS +RQ + +++ EK P P QE
Sbjct: 638 GSRGRSPGRRE---REGERRPRSAERQSRRQDEPKGEPHVVQPEETDEKSKEPPPTQE 692
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,824,456
Number of Sequences: 59808
Number of extensions: 543781
Number of successful extensions: 2014
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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