Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30510
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   6.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.9  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 722 RLVSETRLSFWVN*SRTARCSFPCAS*IEVPVSP 621
           R  +  ++  W+      +  FPC    ++PV+P
Sbjct: 62  RFKAPQKIPAWIGELSATKFGFPCLQYTQLPVNP 95


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 722 RLVSETRLSFWVN*SRTARCSFPCAS*IEVPVSP 621
           R  +  ++  W+      +  FPC    ++PV+P
Sbjct: 62  RFKAPQKIPAWIGELSATKFGFPCLQYTQLPVNP 95


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 542 RNFYREKELLHPGYMAWRPSPR 607
           R  YREK      YMA+R  PR
Sbjct: 385 RRQYREKVKQVEEYMAYRKLPR 406


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 15/74 (20%), Positives = 31/74 (41%)
 Frame = +3

Query: 69  QRTGSFEKRSPSPDLKRQKPDTKKEKIIKTVYEVEKKISPKPIQEEKPSWVTNRNLKKVT 248
           Q T S   R  S    R +   KK++  + ++  +KK+  +    ++ S    R  K   
Sbjct: 225 QHTSSRYSRERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSYK 284

Query: 249 SERGVSVRKKLSRK 290
           +E      ++ S++
Sbjct: 285 NENSYRKYRETSKE 298


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 542 RNFYREKELLHPGYMAWRPSPR 607
           R  YREK      YMA+R  PR
Sbjct: 353 RRQYREKVKQVEEYMAYRKLPR 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,326
Number of Sequences: 438
Number of extensions: 4837
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)