Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30509
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 28 0.26
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 27 0.78
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 1.8
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 25 3.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 4.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 24 4.2
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 24 5.5
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 23 7.3
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 23 7.3
SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces pombe... 23 9.6
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 23 9.6
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 28.3 bits (60), Expect = 0.26
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 175 GVSGQLCGRVLRTLVGAASPTVVPGNPCPPS-LMCEFR*ATGGRCW 41
G++G +C R L L S + + N PP ++ E + TGGR +
Sbjct: 515 GLTGLICARQLTGLFSQYSSSFLSKNELPPKVIILEAKERTGGRIY 560
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 0.78
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 43 NTFHQWLTETRTSMMEGTGSLEQQLATL 126
+T H L+ T TSM E + S E + ATL
Sbjct: 92 STTHSSLSSTLTSMSEESSSTESKFATL 119
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 217 DNRYTEHSTVGLATVGPAGPALYAH 291
+N + H+T G +VGP P L H
Sbjct: 65 ENTFAHHNTTGSNSVGPKKPFLDYH 89
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 115 TVVPGNPCPPSLM 77
+V PG PCPPSL+
Sbjct: 156 SVRPGIPCPPSLV 168
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 148 VLRTLVGAASPTVVPGN 98
+LRT VG +P +PGN
Sbjct: 1517 LLRTAVGGENPMALPGN 1533
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 190 RLTLQGVSGQLCGRVLRTLVGAASPTVVPGNP 95
R L+G G+L G ++ V ++ TV+ G+P
Sbjct: 332 RARLKGKEGRLRGNLMGKRVDFSARTVITGDP 363
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 43 NTFHQWLTETRTSMMEGTGSLEQQLATLRQRAS 141
N FH W R ++ TGS ++ RQ S
Sbjct: 343 NEFHTWWAPLRVVVLHATGSGQRASREKRQYES 375
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = -3
Query: 131 WRSVANCCSREPVPSIIDVRVSVSH 57
W++ +C + P+ +IID ++ H
Sbjct: 148 WKTFTDCFNCLPIAAIIDEKIFTMH 172
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = -3
Query: 131 WRSVANCCSREPVPSIIDVRVSVSH 57
W++ +C + PV ++ID ++ H
Sbjct: 145 WKTFTDCFNCMPVAAVIDEKIFCMH 169
>SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 107 SREPVPSIIDVRVSVSHWW 51
SR+PVP I+ V +S W+
Sbjct: 77 SRKPVPMILTVLGVISTWY 95
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 107 NNSWRRCANERPKYAPAE 160
N SW + NE P+Y AE
Sbjct: 215 NASWGKMLNEDPEYDSAE 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.124 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,314
Number of Sequences: 5004
Number of extensions: 17553
Number of successful extensions: 36
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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