Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30509
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 32 0.095
05_01_0110 - 741968-742279 31 0.22
05_05_0161 + 22833507-22834694 29 0.67
06_01_1013 - 7931756-7935109 29 0.89
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 28 1.2
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 28 1.2
01_05_0490 + 22672241-22674679 28 1.2
08_02_0941 + 22829689-22830012,22830077-22830460 27 2.1
02_04_0061 + 19361562-19363130 27 2.1
01_01_0761 - 5874953-5876803 27 2.1
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 27 2.7
03_02_0269 + 7001891-7002212,7003598-7004037 27 2.7
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 27 2.7
12_01_0981 + 9931542-9931606,9931779-9933105 27 3.6
01_05_0703 - 24404580-24406373 26 4.7
01_02_0001 - 10057548-10057973 26 4.7
09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856... 26 6.3
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 26 6.3
02_04_0413 + 22681957-22682035,22682253-22682788 26 6.3
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 26 6.3
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022... 25 8.3
09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874 25 8.3
07_03_1282 - 25447736-25447813,25448670-25448744,25449212-254492... 25 8.3
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 25 8.3
01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150... 25 8.3
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.9 bits (69), Expect = 0.095
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 244 RCCAPCSGCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
+C +PC C G APP TL+ + + + T PG PCPP
Sbjct: 453 KCLSPCHRCHGPIAPPNPEFTLKPIKRKKGKHIDST----------PGTPCPP 495
>05_01_0110 - 741968-742279
Length = 103
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -1
Query: 136 LVGAASPTVVPGNPCPPSLMCEFR*ATGGRCWRAWRTPSAACRSP 2
L+G+ +P +PG P PP E R A GR AW P AA SP
Sbjct: 10 LLGSHAP--LPGGPAPPRRGLERRIAARGRRAVAWE-PRAAVGSP 51
>05_05_0161 + 22833507-22834694
Length = 395
Score = 29.1 bits (62), Expect = 0.67
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 235 APCSGCPGSDAPPGRRLTLQGVSGQLCGRVLRTL-VGAASPTVVPG 101
A P S PPG+R + V L G++LR + AS V PG
Sbjct: 108 ATAPNLPASSRPPGQRSVARVVCNPLTGQLLRLPDIDGASSEVSPG 153
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 166 GQLCGRVLRTLVGAASPTVVPGNPCPPSLMCEFR*ATGGRCWRAWRT 26
GQ+CG R + P +PC P L CEF C R T
Sbjct: 684 GQVCGAPRRECKHTCTAPCHPSSPC-PDLRCEFPMTIACSCGRITAT 729
>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 268 LVPLWLVPRCCAPCSGCPGSDAPPGRRLTLQGVSGQLCG-RVLRTLVGAASPTV 110
LV LW S C D+P ++L L G++G G VL+ L G S ++
Sbjct: 863 LVELWTSSPALESSSICFSVDSPHLKKLELGGMAGSSSGWEVLQNLTGLESLSI 916
>03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 214 GSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVV 107
G P RL + +S ++CG VL LVG A +V
Sbjct: 1121 GRSWPEALRLEVDEISTEICGEVLDELVGEAFSELV 1156
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = +3
Query: 6 ERQAAEGVRQARQHLPPVAHRNSHINDGGHGFPGTTVGDAAPTSVRSTRPQS*P 167
+++ + G++ ++H H + H++DG + P + + ++VR+T P P
Sbjct: 551 KKRKSIGIKSKKKHHHN-HHHHHHLSDGHYSSPSSDASASPDSTVRTTNPAPAP 603
>08_02_0941 + 22829689-22830012,22830077-22830460
Length = 235
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 30 RQARQHLPPVAHRNSHINDGG 92
RQ QHLPP A + +H GG
Sbjct: 23 RQEDQHLPPAATQRNHSGAGG 43
>02_04_0061 + 19361562-19363130
Length = 522
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -1
Query: 226 SGCPGSDAPPGRRLTLQ--GVSGQLCGRVLRTLVGAASPTVVPGNPCPPSLMCEFR*ATG 53
SGC ++ G L + G G L V R V A+ +P P + CE R A
Sbjct: 340 SGCAAANVGGGGGLCGRTGGEVGGLYWEVRRQRVEPANKEFLPFEHSPSAADCEVRCARN 399
Query: 52 GRCWRA 35
CW A
Sbjct: 400 CSCWGA 405
>01_01_0761 - 5874953-5876803
Length = 616
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 259 LWLVPRCCAPCSGCPGSDAPPGRRLT 182
LWL PR A +G DAPP ++T
Sbjct: 370 LWLDPRSAATTAGIISYDAPPLEKVT 395
>03_05_0042 +
20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 235 APCSGCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNP 95
AP + + P G T + V+G+ G+ L T V AAS T +P
Sbjct: 2 APAAASSSALLPAGTFSTARPVAGRPAGQRLPTRVAAASRTTTARSP 48
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -1
Query: 220 CPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGN----PCPP 86
CP DA P GV CG + + ++ P +V G+ PCPP
Sbjct: 125 CPEVDAVPKHVQARFGVPMPPCGEAPSSTLLSSGPMLVQGSGKVLPCPP 173
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 27.1 bits (57), Expect = 2.7
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Frame = +3
Query: 15 AAEGVRQARQHLPPVAHRN-SHINDGGHG-------FPGTTVGDAAPTSVRSTRPQS*PE 170
AA+G R AR H A RN +H G P G AP R + P P
Sbjct: 27 AADGARSARHHHAKHAKRNAAHPPSQAPGPAARHAPGPARHHGAPAPHPGRRSPPAPAPA 86
Query: 171 TPXXXXXXPGGASDPGQPLHGA 236
P PGGA P GA
Sbjct: 87 NPPSSDPMPGGAPS-AAPAAGA 107
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 45 HLPPVAHRNSHINDGGHG 98
H+PP++ +H +GGHG
Sbjct: 121 HVPPISSTPTHFWEGGHG 138
>01_05_0703 - 24404580-24406373
Length = 597
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 208 DAPPGRRLTLQGVSGQLCGRVLRTLVGAASPT-VVPG 101
+APPG + + G SG +L L G+A P VV G
Sbjct: 58 EAPPGEVVAIVGPSGAGKTTLLSVLAGSADPARVVAG 94
>01_02_0001 - 10057548-10057973
Length = 141
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +3
Query: 15 AAEGVRQARQHLPPVAHRNSHINDGGHGFPGTTVGDAAPTSV 140
A EG R+ LPP R S GG G GT G A P +V
Sbjct: 59 AREGSRRCSGGLPPHRWRFSESAQGGGG--GTGEGAADPAAV 98
>09_04_0587 +
18782870-18783828,18784084-18784265,18785283-18785629,
18786497-18786739
Length = 576
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 15 AAEGVRQARQHLPPVAHRNSHIND-GGHGFPGTTVGDAAPTSVRST 149
A EG R+ LPP R GG GDA P +R T
Sbjct: 2 AVEGRRRVPLPLPPPTRRGKQQQQQGGERARRVQAGDALPLPIRHT 47
>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -3
Query: 131 WRSVANCCSREPVPSIIDVRVSVSHWWKVLACLANS 24
WR+ C R + + V V W+ + CL +S
Sbjct: 1037 WRTYLRSCVRNNLRTFFQVLVQSQWWYNLEGCLLHS 1072
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 247 PRCCAPCSGCPGSDAPP 197
P CC C GC G + PP
Sbjct: 144 PGCC--CCGCSGGECPP 158
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 259 LWLVPRCCAPCSGCPGS 209
LW+ C+PC+GCP S
Sbjct: 115 LWVA---CSPCTGCPSS 128
>12_02_1229 +
27197464-27197481,27200438-27201583,27201935-27202201,
27202849-27202882,27202997-27203100,27203174-27203308,
27203367-27203511,27203864-27203880
Length = 621
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +3
Query: 6 ERQAAEGVRQARQHLPPVAHRNSHI----NDGGHGFPGTTVGDAAPTSVRSTRPQS*PET 173
+R ++G Q QH+ P++ +SH+ G P V P + R +S P
Sbjct: 386 DRVPSDGKAQGSQHVRPMSPSSSHLILISPSHAFGLPNDAVAFRQPPLLLPRRRRSPPAR 445
Query: 174 P 176
P
Sbjct: 446 P 446
>09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874
Length = 257
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 172 VSGQLCGRVLRTLVGAASPTVVP 104
V G++C V R LVG +PT P
Sbjct: 165 VYGEICTGVARFLVGVPAPTTRP 187
>07_03_1282 -
25447736-25447813,25448670-25448744,25449212-25449281,
25449515-25449747,25451210-25451719
Length = 321
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -1
Query: 274 VQLVPLWLVPRCCAPCSGCPGSDAPP 197
V V +WL P CP D PP
Sbjct: 113 VACVDMWLKSHSTCPLCRCPAVDEPP 138
>06_03_0723 +
23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 160 LCGRVLRTLVGAASPTVVPGNPCPPSLMCE 71
L G+ T++ AA+ VPG P +L+CE
Sbjct: 379 LRGKTFYTMISAAN-AAVPGYPPADALLCE 407
>01_06_1834 +
40214378-40214563,40214728-40214818,40215006-40215093,
40215444-40215695,40215927-40216101,40216243-40216329,
40216445-40216513,40216638-40216734,40217010-40217092,
40217373-40217480,40217672-40217793,40217921-40218028,
40218121-40218194,40218492-40218617,40219655-40219722,
40219930-40220079,40220164-40220214,40220678-40220734,
40220824-40220970,40221064-40221155,40221516-40221625,
40221728-40221791,40221883-40222032,40222554-40222788
Length = 929
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 1 EENDKLRKEFAKHA----NTFHQWLTETRTSMMEGT 96
EE++K+ F K A N++ QW T+T EGT
Sbjct: 527 EESEKI-STFLKRAYVRLNSWFQWFNSTQTGKYEGT 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.124 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,492,829
Number of Sequences: 37544
Number of extensions: 176382
Number of successful extensions: 535
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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