Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30509
(301 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15589| Best HMM Match : Pentapeptide (HMM E-Value=1.7) 42 1e-04
SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.70
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37) 27 2.8
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 26 4.9
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_21785| Best HMM Match : DIX (HMM E-Value=4.4) 25 8.6
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 25 8.6
SB_15222| Best HMM Match : Glycoprotein_G (HMM E-Value=0.84) 25 8.6
>SB_15589| Best HMM Match : Pentapeptide (HMM E-Value=1.7)
Length = 502
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = +1
Query: 82 MMEGTGSLEQQLATLRQRASXXXXXXXXXXXXXXXXXXXXXXXILDNRYTEHSTVGLA 255
M+EG G LE QLA + ++ + ILDNRYTEHSTV LA
Sbjct: 1 MVEGQGDLEDQLAEIMRKDTEIADCKADLEVIEGLGAQMEEALILDNRYTEHSTVDLA 58
Score = 35.1 bits (77), Expect = 0.011
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 257 QWDQLDQLSMRMQHN 301
QWDQLDQL+MRM+HN
Sbjct: 60 QWDQLDQLAMRMKHN 74
>SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 7 NDKLRKEFAKHANTFHQWLTE----TRTSMMEGTGSLEQQLATLR 129
N++LR EFA AN W+ + RT GSLE+ L L+
Sbjct: 396 NERLRVEFANKANVVGPWIQQQGEKLRTIGFHMEGSLEKNLQVLQ 440
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 1 EENDKLRKEFAKHANTFHQWLTETRTSMMEGTGSLEQQLATLRQ 132
+E D+ R N HQ L E R + + T L++ +T+R+
Sbjct: 808 QEIDRERNASQLETNEMHQKLQEARAELEKKTSELKELSSTMRE 851
>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
Length = 942
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 193 RRLTLQGVSGQLCGRVL-RTLVGAASPTVVPGNP 95
RR+ ++G+SG+ CGR L R + G ++ NP
Sbjct: 770 RRIGVRGLSGRSCGRPLTRRICGTLQMCLLSVNP 803
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 244 RCCAPCSGCPGSDAPPGRRLTLQG--VSGQLCGRVLRTLVGAASPTVVPGNPCPPS 83
+CC C G R+ G +S QLC V++ + G + PG P P+
Sbjct: 786 QCCTMRWKCKEKSCRFGGRILRHGFSLSDQLCTGVVKCVNGNLKMSYCPGIPAKPT 841
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Frame = -1
Query: 169 SGQLCGRVLRTLVGAASPTVVPGNPCPPSLMCEFR*AT----GGRCWRAWRTPSAACR 8
SG+LCG V+ G AS PG P P + G C W+ +CR
Sbjct: 743 SGELCGGVVVCRNGIASIKKCPGLPDKPKNCANPKLIVNHHKGQCCTMRWKCKEKSCR 800
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 226 SGCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNP 95
+G PG G L++QG G R R +G PT PG P
Sbjct: 590 AGAPGEKGARG--LSIQGTPGMDGKRGPRGPIGEKGPTGFPGPP 631
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 108 TTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQPL 227
TT+ PT+V +T P + P TP P +PL
Sbjct: 29 TTIPTTIPTTVPTTEPTTAPTTPEPTTLEPTDPPTTERPL 68
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -2
Query: 192 GA*LFKASQVSSAGAYFGRSL---AQRRQLLFQGT 97
GA L+ + Q+S+ G Y+GR L +Q R L Q T
Sbjct: 472 GAGLYGSDQMSALGPYYGRDLMYTSQYRPSLVQPT 506
>SB_21785| Best HMM Match : DIX (HMM E-Value=4.4)
Length = 480
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 51 PPVAHRNSHINDGGHGFPGTTVGDAAPTSVRSTRPQS 161
PP R H++ G D PT R+ PQS
Sbjct: 434 PPAPQRGFHVSHGADPGKRDIPRDGRPTRTRTGMPQS 470
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 157 CGRVLRTLVGAASPTVVPGNPC 92
CGR V +SPT P +PC
Sbjct: 642 CGRTTVPPVSTSSPTPTPQDPC 663
>SB_15222| Best HMM Match : Glycoprotein_G (HMM E-Value=0.84)
Length = 244
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 108 TTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQ 221
TT+ PT+V +T P + P TP P G+
Sbjct: 183 TTIPTTIPTTVPTTEPTTAPTTPEPTTLEPTDPPTTGE 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.124 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,000,225
Number of Sequences: 59808
Number of extensions: 166746
Number of successful extensions: 369
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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