Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30509
(301 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 87 3e-18
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 33 0.029
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 29 0.82
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 29 0.82
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 29 0.82
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 29 0.82
Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 28 1.4
U21321-3|AAG00052.2| 655|Caenorhabditis elegans Hypothetical pr... 28 1.4
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 28 1.4
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 28 1.4
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 27 1.9
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 27 1.9
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 27 3.3
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 3.3
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 3.3
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 3.3
U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five) in... 27 3.3
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 27 3.3
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 26 4.4
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 26 4.4
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 26 4.4
Z81066-4|CAB02972.2| 278|Caenorhabditis elegans Hypothetical pr... 26 5.8
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 26 5.8
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 26 5.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 26 5.8
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 25 7.6
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 25 7.6
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 25 7.6
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 25 7.6
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 25 7.6
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 25 7.6
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 86.6 bits (205), Expect = 3e-18
Identities = 43/85 (50%), Positives = 50/85 (58%)
Frame = +1
Query: 1 EENDKLRKEFAKHANTFHQWLTETRTSMMEGTGSLEQQLATLRQRASXXXXXXXXXXXXX 180
EENDKLR+EFAK AN FH WLT TR MME G+LE+QL + ++A
Sbjct: 2161 EENDKLRREFAKLANAFHAWLTNTRQEMMEAGGTLEEQLDAVERKAKEIKANKGQLRQIE 2220
Query: 181 XXXXXXXXXXILDNRYTEHSTVGLA 255
ILDNRYTEHSTVG+A
Sbjct: 2221 EKGAMLERNLILDNRYTEHSTVGIA 2245
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +2
Query: 260 WDQLDQLSMRMQHN 301
WDQLDQL+MRMQHN
Sbjct: 2248 WDQLDQLAMRMQHN 2261
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +3
Query: 81 NDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQP 224
N G G PG DA S+ Q+ P+ P PG PGQP
Sbjct: 199 NPGQAGAPGQPGADAQSESIPGAPGQAGPQGPPGPAGSPGAPGGPGQP 246
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 81 NDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQ 221
N G G PG DA S Q+ P+ P PG PGQ
Sbjct: 199 NPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQ 245
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 81 NDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQ 221
N G G PG DA S Q+ P+ P PG PGQ
Sbjct: 199 NPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQ 245
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 81 NDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQ 221
N G G PG DA S Q+ P+ P PG PGQ
Sbjct: 199 NPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQ 245
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 28.7 bits (61), Expect = 0.82
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 241 CCAPCSGCPGSDAPPGR--RLTLQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
CC P G PG PGR + + G G+ G R + V P NPCPP
Sbjct: 92 CCKP--GHPGRPGLPGRNGKPGVPGAPGRP-GTPGRPPIVCEEQDVPPCNPCPP 142
>Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical
protein F54B11.1 protein.
Length = 339
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Frame = +3
Query: 87 GGHGFPGTTVGDAAPTSVRSTR-----PQS*PETP--XXXXXXPGGASDPGQPL 227
GGHG PG A+P R+ PQ P P PGG PGQ +
Sbjct: 162 GGHGMPGMPGLGASPCQPRTQSQCQQCPQGPPGPPGLNGQPGLPGGMGPPGQSM 215
>U21321-3|AAG00052.2| 655|Caenorhabditis elegans Hypothetical
protein ZK177.4 protein.
Length = 655
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Frame = +1
Query: 58 WLTETRTSM---------MEGTGSLEQQLATLRQRAS 141
W TE +TS M+ TGSLEQQLA L+ A+
Sbjct: 432 WSTENKTSFGRDSVSQPPMKSTGSLEQQLAALKPLAA 468
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -1
Query: 241 CCAPCSGCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
C A G PG D PPG + G +G G + + +GA SP PG PP
Sbjct: 141 CPAGPMGSPGPDGPPG----VPGATGN-PGSLGESSLGAGSPG-PPGGVGPP 186
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +3
Query: 54 PVAHRNSHINDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQP 224
P R + + G G PG DA S Q+ P+ P PG PG P
Sbjct: 174 PKGQRGAPGHPGQAGAPGQPGVDAQSQSTPGAPGQAGPQGPPGSSGAPGAPGGPGFP 230
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = -1
Query: 241 CCAPCSGCPGSDAPPGRRLT--LQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
CC P G PG D PPG+ G G G R T P PCPP
Sbjct: 99 CCLP--GLPGPDGPPGKNGAPGRPGAPG-APGFPGRPPAVCEEITEPPCTPCPP 149
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +3
Query: 54 PVAHRNSHINDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQP 224
P R + + G G PG DA S Q+ P+ P PG PG P
Sbjct: 195 PKGQRGAPGHPGQAGSPGRPGVDAQSQSNPGAPGQAGPQGPPGPSGAPGAPGGPGYP 251
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = +3
Query: 81 NDGGHGFPGTTVGDAAPTSVRSTRPQ---S*PETPXXXXXXPGGASDPGQP 224
NDG G PG DA V+ T P P PG PGQP
Sbjct: 111 NDGRPGAPGAPGPDAPNEHVQPTPADFCFECPPGPAGNAGNPGPKGPPGQP 161
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 1 EENDKLRKEFAKHAN 45
+END+LR+EF ++AN
Sbjct: 281 DENDRLRREFERYAN 295
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 1 EENDKLRKEFAKHAN 45
+END+LR+EF ++AN
Sbjct: 354 DENDRLRREFERYAN 368
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 1 EENDKLRKEFAKHAN 45
+END+LR+EF ++AN
Sbjct: 354 DENDRLRREFERYAN 368
>U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform e protein.
Length = 372
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 1 EENDKLRKEFAKHAN 45
+END+LR+EF ++AN
Sbjct: 354 DENDRLRREFERYAN 368
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 87 GGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQP 224
G +G PG GDA P ++ P+ P PG +PG+P
Sbjct: 171 GTNGAPGAPGGDAPP-------GEAGPKGPPGPPGSPGAPGEPGRP 209
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +3
Query: 81 NDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQ 221
NDG G PG AP +V Q P P PG A + GQ
Sbjct: 215 NDGQPGGPG---NPGAPGAVTEVPGQQGPPGPPGPAGPPGPAGNAGQ 258
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 84 DGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQP 224
DG G PGT G A + T + P PGG PG P
Sbjct: 134 DGKAGNPGTA-GSDAEAAAAPTASDFCFDCPPGPAGPPGGPGPPGPP 179
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -1
Query: 223 GCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
G PG+ PPG R G G V ++S PG P PP
Sbjct: 225 GIPGARGPPGER----GEKGDTAFLSTYPRVASSSTASSPGPPGPP 266
>Z81066-4|CAB02972.2| 278|Caenorhabditis elegans Hypothetical
protein F17B5.4 protein.
Length = 278
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 101 PWNNSWRRCANERPKYAPAE 160
PW +S R CA+E+ + P+E
Sbjct: 62 PWTSSSRDCASEKSFFDPSE 81
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 136 LVGAASPTVVPGNPCPPSLMC 74
+ G P +PG+PC P + C
Sbjct: 153 VAGRLIPQALPGSPCEPGVEC 173
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 226 SGCPGSDAPPGRRLTLQGVSG 164
SG PG+D PPG R G+SG
Sbjct: 245 SGIPGNDGPPGAR-GQPGLSG 264
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -1
Query: 241 CCAPCSGCP-GSDAPPGRRLTLQGVSGQ 161
C A SGCP G PPG T G GQ
Sbjct: 127 CAAQASGCPAGPPGPPGEAGT-DGEPGQ 153
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -1
Query: 223 GCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
G PG+ PGR G G+ +T VG A PG P PP
Sbjct: 243 GIPGAPGQPGR----PGPPGE--PGTYKTEVGPAGRAGAPGRPGPP 282
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +3
Query: 87 GGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDPGQP 224
G G PG +G+A P TR Q P P PG G P
Sbjct: 197 GEPGKPGK-LGEAGPNGRDGTRGQKGPIGPKGDSGPPGQKGPSGYP 241
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 48 LPPVAHRNSHINDGGHGFPGTTVGDAAPTSVRS---TRPQS*PETPXXXXXXPGGASDPG 218
LP V G G PG VG P+ T Q P+ P PG +PG
Sbjct: 209 LPAVCEPVQKGEPGSTGEPGP-VGPPGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNPG 267
Query: 219 QP 224
QP
Sbjct: 268 QP 269
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -1
Query: 223 GCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
G PG+ PGR G G+ +T VG A PG P PP
Sbjct: 224 GIPGAPGQPGR----PGPPGE--PGTYKTEVGPAGRAGAPGRPGPP 263
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 48 LPPVAHRNSHINDGGHGFPGTTVGDAAPTSVRS---TRPQS*PETPXXXXXXPGGASDPG 218
LP V G G PG VG P+ T Q P+ P PG +PG
Sbjct: 209 LPAVCEPVQKGEPGSTGEPGP-VGPPGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNPG 267
Query: 219 QP 224
QP
Sbjct: 268 QP 269
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -1
Query: 247 PRCCAPCSGCPGSDAPPGRRLTLQGVSGQLCGRVLRTLVGAASPTVVPGNPCPP 86
P+C PC+ PG PPG G+ G GR GA P G P PP
Sbjct: 137 PQC--PCTAAPGLGGPPGPP-GQDGIPGN-PGR--NGEDGAPGPQGPSGPPGPP 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.124 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,347,707
Number of Sequences: 27780
Number of extensions: 125104
Number of successful extensions: 450
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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