Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30509
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   7.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 154  GRVLRTLVGAASPTVVPGNPCPP 86
            G V R  VG+A    V G+P PP
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPP 1860


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 25  EFAKHANTFHQWLT 66
           ++AKH N    WLT
Sbjct: 293 KYAKHKNNRRVWLT 306


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 247 PRCCAPCSGCPGSDAPPGRRLTLQGVSGQLC 155
           P  C P      +D  PG +  + GV G  C
Sbjct: 519 PSACRPRHEIRSTDVIPGTQEHVCGVKGIPC 549


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +2

Query: 95  RVPWNNSWRRCA----NERPKYAPAELT*DALKS 184
           RVP+N  WR       N  P+Y+ A +  + + S
Sbjct: 81  RVPYNRVWRPDTILYNNADPQYSSAVINTNVIVS 114


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 103 GNPCPPSLM 77
           G+PC PSL+
Sbjct: 49  GDPCDPSLL 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.124    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,695
Number of Sequences: 438
Number of extensions: 1282
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)