Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30509
(301 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60230.1 68416.m06731 hypothetical protein 28 1.0
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 27 2.3
At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive eff... 26 4.1
At4g37840.1 68417.m05353 hexokinase, putative similar to hexokin... 25 7.1
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla... 25 7.1
At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-... 25 7.1
At5g58350.1 68418.m07306 protein kinase family protein contains ... 25 9.4
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 25 9.4
At1g27600.2 68414.m03368 glycosyl transferase family 43 protein ... 25 9.4
>At3g60230.1 68416.m06731 hypothetical protein
Length = 207
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 18 AEGVRQARQHLPPVAHRNSHIN-DGGHGFPGTTVGDAAPTS 137
A+G Q R +LPPV H N+H N H G PT+
Sbjct: 73 AQGGGQPRVNLPPVNHPNNHNNGPNAHSRSQGEPGVGGPTN 113
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 54 PVAHRNSHINDGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXPGGASDP 215
P ++ H G PG+ S +S+ P S +P PGGA P
Sbjct: 134 PSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSP 187
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 247 PRCCAPCSGCPGSDAPPG 194
P AP S PGS PPG
Sbjct: 140 PHAAAPGSSTPGSMTPPG 157
>At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 638
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 214 LDNRYTEHSTVGLATVGPAG 273
L N+Y+EH+T GL + AG
Sbjct: 273 LSNKYSEHATYGLGNIFLAG 292
>At4g37840.1 68417.m05353 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 493
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 199 PGRRLTLQGVSGQLCGRVL-RTLVGAASPTVVPGNPCPPSL 80
PG R+ + VSG+ G ++ R L+ + + + G+ PP L
Sbjct: 309 PGHRIFEKMVSGRYLGEIVRRVLLKMSEESALFGDTLPPKL 349
>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
uclacyanin II GI:3399769 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin II GI:3399768
Length = 202
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 84 DGGHGFPGTTVGDAAPTSVRSTRPQS*PETPXXXXXXP-GGASDPGQPLHGA 236
+GG V +A T P S P TP P GG+ P P GA
Sbjct: 115 NGGMKLAVNVVAGSAGPPATPTPPSSTPGTPTTPESPPSGGSPTPTTPTPGA 166
>At2g16810.1 68415.m01927 F-box family protein (FBX8) contains F-box
domain PF:00646
Length = 295
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 113 SWRRCANERPKYAPAEL 163
SW+R ANE P + P+ L
Sbjct: 223 SWKRVANEFPHHVPSHL 239
>At5g58350.1 68418.m07306 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 571
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 9 RQAAEGVRQARQHLPPVAHRN 71
RQ EG+ +H PPV HR+
Sbjct: 127 RQILEGLVYLHEHDPPVIHRD 147
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 253 LVPRCCAPCSGCPGSDAPP 197
L P C + CS CP +PP
Sbjct: 27 LTPLCISECSTCPTICSPP 45
>At1g27600.2 68414.m03368 glycosyl transferase family 43 protein
similar to Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase 1, Rattus norvegicus
[SP|O35789], Homo sapiens [SP|Q9P2W7]; contains Pfam
domain Glycosyltransferase family 43 [PF03360]
Length = 394
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 39 RQHLPPVAHRNSHINDGGHGFPGTTVGDAA 128
R+ L P+ H SH N G H G T+G ++
Sbjct: 5 RRTLSPMYHDRSHENGGSH--KGFTIGGSS 32
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.124 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,050,647
Number of Sequences: 28952
Number of extensions: 109066
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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