Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30508
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 80 4e-16
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 5e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.003
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.005
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.005
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.009
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.012
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.036
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.036
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.047
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.083
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 32 0.11
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.11
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.25
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.25
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 30 0.44
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.58
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 1.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.3
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 28 1.3
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 28 1.8
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.3
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 4.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 5.4
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 5.4
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 5.4
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 7.2
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 7.2
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 7.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 9.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 9.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 79.8 bits (188), Expect = 4e-16
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F E+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPRE 241
Query: 422 -----GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+FVGG+ + +++E RNFF++FG +L+ + K + R
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPR 288
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 63 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 239
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 240 HF 245
+F
Sbjct: 182 YF 183
Score = 48.0 bits (109), Expect = 2e-06
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
DK + +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 281 DKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 42.3 bits (95), Expect = 8e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERA 550
GK+F+GGL+ E +DD +R++F +FG +L+ C + + T R+
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLD--CTVMRDSTTGRS 203
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D T + +GF F+TF++ + VN+++ + + + GK +D KRA P+ +
Sbjct: 197 DSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREE 242
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
D +TGR RGF F+ ++ +++ M+ TI+ K V+ K+A
Sbjct: 281 DKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
K+FVGG+ + T++E R+ F +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQF 270
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.5 bits (88), Expect = 5e-04
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------D 397
F SI + SI V D T RS G+A++ F E +K + +T+ + D
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
P K G +F+ L I + + + FS FG IL
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 195
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 206 ELGDHR*GAP*SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
E+ D R A F + I S + TD G+S+GF F+ + PE +K +
Sbjct: 374 EVDDERLKA--EFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 379
+F +I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 31.1 bits (67), Expect = 0.19
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 23/114 (20%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKV-----DPKK----- 406
I V D +GRS+G+ ++ F+ PE+ +AA G I+ + V +P+
Sbjct: 289 IVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQP 348
Query: 407 -AKARHGK-----------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQ 532
A+ R G +FVG LS ++D++ F G I R P Q
Sbjct: 349 YAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQ 402
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
+FVG LS + D + F E+GTI+ R + Q + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSK 304
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Frame = +2
Query: 347 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRC 517
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ R
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 518 ---PLTK 529
P+TK
Sbjct: 133 MREPVTK 139
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCP 520
P+ A + +FVGGLS +S++E++ F FG I+ + P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 263 ESINVKTDPNTGRSRGFAFIVF 328
+S + TDP T SRG+ F+ F
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRF 235
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 87 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFG 248
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFG 249
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 376
F + +I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 248 FGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 368 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
E TI K + K + + G ++VG L + ++R +FS+FG +L R
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLR 135
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 377 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
+NN K+ P + + I+VG + S +SD+EI FS++G +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 144 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAY 254
+++ PG+ D+ ++VG + +D+E+ HF Y
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKY 40
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.5 bits (73), Expect = 0.036
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTK 529
+FVGGL+S +S+ +++ F FG IL + P K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.1 bits (72), Expect = 0.047
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 370
F I+ + + DP T +GFA+I FK +DK + E
Sbjct: 290 FGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 427
++ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++ + GK
Sbjct: 117 QVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 508 MEMPFDKTKNQRKGFCFITF 567
+ +P DKT ++KG+ F+ F
Sbjct: 121 VRIPTDKTSGRQKGYAFVEF 140
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
+ SI + DP T RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
+I+VGGLSS I ++ + FS FG++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSV 31
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 30.7 bits (66), Expect = 0.25
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 394
F + I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
+FV L+ + D++ NFFS+ G I
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPI 31
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.25
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 338 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRC 517
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 518 PLTKQRTKER 547
P + R R
Sbjct: 76 PFRRVRRGTR 85
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 135 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHF 245
D+ H SAE P + DD ++FVG LS T E+R F
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLF 64
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 502 LRMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEVDVKRATP 654
+R+ M +D+ + +G C + FE+ Q D KT + T + G E+ + + +P
Sbjct: 111 IRVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQSTNLKGSEIQISKKSP 161
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.58
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
H ++FVG L ++++D+ + FSE+ ++++
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVK 58
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 505 RMEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDV 639
++ MP DK N KGF +I F +++ V L+ + G+ + V
Sbjct: 351 QVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 392 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
+ P K +F+GG++ + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPES 343
F E IN+ D TG+S+GFAF+ ++ S
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
I++G L ++++D+I FSEFG ++ K+ K +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSK 72
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFK 331
IE I V + TG+S G+AF+VF+
Sbjct: 126 IERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 305 RGFAFIVFKAPESIDKVMAAGEHTINNKK 391
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 196 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 83
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDK 352
+I S V D TG S +AFI F ES++K
Sbjct: 269 KIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 200 WAELGDHR*GAP*SFWSIREIESINVKTDPNT 295
WA G + +P + E+ES++VK++ +T
Sbjct: 157 WAGYGSEQSSSPLEYSEYEEVESLDVKSEKDT 188
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVF 328
I+ + + D TGR++GFAF+ +
Sbjct: 228 IQRVYLAKDKETGRAKGFAFVSY 250
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 171 RDDDRKLFVGGLSWETTDKELRDHF 245
RDD L V LS +T ++ELRD F
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLF 222
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 MPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE--VDVKR 645
MP K KG+C+I + +Q N + K + G+E V +KR
Sbjct: 130 MPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSIKR 176
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 412 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTYA 248
F+LL L + GV Y ++ + H+ G P WICL+ +F A
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFIIA 139
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/66 (19%), Positives = 29/66 (43%)
Frame = +2
Query: 251 IREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 430
+ E+E V +P + ++F K+ A +++ +++DP K A +
Sbjct: 350 VGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVSALQQML 409
Query: 431 FVGGLS 448
GG++
Sbjct: 410 IAGGVN 415
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 189 LFVGGLSWETTDKELRDHF 245
++VG L W T+D+ L D F
Sbjct: 282 IYVGNLPWATSDRNLLDLF 300
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2
Query: 448 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 269
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 268 TL 263
TL
Sbjct: 1251 TL 1252
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
+F+G L S + EI F +FG I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKI 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,652
Number of Sequences: 5004
Number of extensions: 60271
Number of successful extensions: 265
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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