Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30508
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 81 9e-16
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 81 9e-16
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 68 7e-12
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 68 7e-12
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 64 1e-10
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 64 1e-10
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 64 1e-10
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 64 1e-10
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 64 1e-10
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 41 9e-04
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 40 0.002
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 40 0.002
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 40 0.002
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 40 0.002
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 40 0.002
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 40 0.003
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 39 0.005
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 39 0.005
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 39 0.005
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 39 0.005
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 39 0.005
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 39 0.005
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 39 0.005
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 37 0.019
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.034
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.034
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 35 0.059
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 35 0.059
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 35 0.059
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 35 0.078
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 35 0.078
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 35 0.078
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 35 0.078
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 35 0.078
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 35 0.078
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 35 0.078
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 35 0.078
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 35 0.078
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 34 0.10
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 34 0.10
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 34 0.10
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.18
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.18
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 33 0.18
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 33 0.18
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 33 0.18
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 33 0.18
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 33 0.18
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 33 0.18
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 33 0.24
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 33 0.24
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 33 0.24
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 33 0.31
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 33 0.31
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 33 0.31
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.31
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 32 0.42
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 32 0.55
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 32 0.55
AF039035-2|AAB94162.1| 304|Caenorhabditis elegans Hypothetical ... 31 0.96
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 30 2.2
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 2.2
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 30 2.2
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 30 2.2
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 30 2.2
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 30 2.2
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 30 2.2
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 30 2.2
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 2.2
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 2.2
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 2.2
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 2.2
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 2.2
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 30 2.2
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 3.9
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 5.1
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 29 5.1
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 29 5.1
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 28 6.8
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 28 6.8
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical pr... 28 8.9
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 8.9
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 81.0 bits (191), Expect = 9e-16
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F E+ VK D GRSRGFAF+ F E +AA E TI K V+ K AK+R
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE 108
Query: 422 G-KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+FVGGL S+ S+ ++R+ F +FG + + P KQ TK R
Sbjct: 109 NKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQ-TKAR 150
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 508 MEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+E PFDK R+ F FI FE E+ + K+T G +E DVK+A P+
Sbjct: 139 IEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +3
Query: 93 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
TDN++NGNA ++ N G ++D+K+FVGG+S E +++L HF Y
Sbjct: 4 TDNKINGNAS----ETIKENGHSTKG-NEDKKIFVGGISPEVNNEDLSSHFTQY 52
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F +++ I D T R FAFIVF+ ES DK + + T ++ D KKA
Sbjct: 130 FEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKA-VPQ 188
Query: 422 GKIFVG 439
GK F G
Sbjct: 189 GKRFPG 194
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 511 EMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 648
++ +D+T + +GF F+ F + + L ++TI GK V+VK A
Sbjct: 59 QVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
Score = 33.1 bits (72), Expect = 0.24
Identities = 10/28 (35%), Positives = 23/28 (82%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGG+S E++++++ + F+++G + +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQ 57
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +3
Query: 177 DDRKLFVGGLSWETTDKELRDHFGAYVK 260
+++K+FVGGL + ++++LR HF + K
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGK 135
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 81.0 bits (191), Expect = 9e-16
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F E+ VK D GRSRGFAF+ F E +AA E TI K V+ K AK+R
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE 108
Query: 422 G-KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+FVGGL S+ S+ ++R+ F +FG + + P KQ TK R
Sbjct: 109 NKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQ-TKAR 150
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 508 MEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+E PFDK R+ F FI FE E+ + K+T G +E DVK+A P+
Sbjct: 139 IEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +3
Query: 93 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
TDN++NGNA ++ N G ++D+K+FVGG+S E +++L HF Y
Sbjct: 4 TDNKINGNAS----ETIKENGHSTKG-NEDKKIFVGGISPEVNNEDLSSHFTQY 52
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F +++ I D T R FAFIVF+ ES DK + + T ++ D KKA
Sbjct: 130 FEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKA-VPQ 188
Query: 422 GKIFVG 439
GK F G
Sbjct: 189 GKRFPG 194
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 511 EMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 648
++ +D+T + +GF F+ F + + L ++TI GK V+VK A
Sbjct: 59 QVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
Score = 33.1 bits (72), Expect = 0.24
Identities = 10/28 (35%), Positives = 23/28 (82%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGG+S E++++++ + F+++G + +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQ 57
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +3
Query: 177 DDRKLFVGGLSWETTDKELRDHFGAYVK 260
+++K+FVGGL + ++++LR HF + K
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGK 135
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK------ 403
F E+ V DP T R+RGF FI F P S+DKV+ EH ++ KK+DPK
Sbjct: 65 FGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKR 124
Query: 404 ---KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K + K+F+GGLS+ + ++++ +F +G +
Sbjct: 125 TQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKV 160
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 168 GRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G D K+F+GGLSW+TT + LRD+FG +
Sbjct: 40 GSQDPGKMFIGGLSWQTTAENLRDYFGRF 68
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
FDK + +GF F+TF+S++V + + + I GK V+ K+A PK
Sbjct: 167 FDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
F + ++E + D T R RGF F+ F + E DKV H IN K V+ KKA+ +
Sbjct: 154 FETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 368 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE---WRCPLTKQ 532
E +N D GK+F+GGLS + + + +R++F FG + E R P TK+
Sbjct: 27 EARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKR 84
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D + +GF FITF V+ +L + + GK++D K A PK
Sbjct: 79 DPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK------ 403
F E+ V DP T R+RGF FI F P S+DKV+ EH ++ KK+DPK
Sbjct: 65 FGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKR 124
Query: 404 ---KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K + K+F+GGLS+ + ++++ +F +G +
Sbjct: 125 TQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKV 160
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 168 GRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G D K+F+GGLSW+TT + LRD+FG +
Sbjct: 40 GSQDPGKMFIGGLSWQTTAENLRDYFGRF 68
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
FDK + +GF F+TF+S++V + + + I GK V+ K+A PK
Sbjct: 167 FDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
F + ++E + D T R RGF F+ F + E DKV H IN K V+ KKA+ +
Sbjct: 154 FETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 368 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE---WRCPLTKQ 532
E +N D GK+F+GGLS + + + +R++F FG + E R P TK+
Sbjct: 27 EARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKR 84
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D + +GF FITF V+ +L + + GK++D K A PK
Sbjct: 79 DPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
EI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R K
Sbjct: 48 EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRS 107
Query: 428 --------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
++V G+ + ++D + +F+++GT+ + L K K R
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 57 DPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE---WRCPLTKQ 532
KIFVGGL+S +DD +R F+S+FG I + R P TK+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR 62
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 117 AENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
AENG GD+ S E ++ RK+FVGGL+ TTD +R+ + +
Sbjct: 8 AENGSGDA----SLEP---ENLRKIFVGGLTSNTTDDLMREFYSQF 46
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 505 RMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
+ E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 142 KSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 194
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
EI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R K
Sbjct: 10 EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRS 69
Query: 428 --------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
++V G+ + ++D + +F+++GT+ + L K K R
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 117
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 19 DPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 65
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 110 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 154
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 505 RMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
+ E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 104 KSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 156
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
EI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R K
Sbjct: 10 EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRS 69
Query: 428 --------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
++V G+ + ++D + +F+++GT+ + L K K R
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 117
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 19 DPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 65
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 110 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 154
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 505 RMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
+ E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 104 KSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 156
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
EI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R K
Sbjct: 48 EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRS 107
Query: 428 --------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
++V G+ + ++D + +F+++GT+ + L K K R
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 57 DPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE---WRCPLTKQ 532
KIFVGGL+S +DD +R F+S+FG I + R P TK+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR 62
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 117 AENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
AENG GD+ S E ++ RK+FVGGL+ TTD +R+ + +
Sbjct: 8 AENGSGDA----SLEP---ENLRKIFVGGLTSNTTDDLMREFYSQF 46
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 505 RMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
+ E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 142 KSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 194
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
EI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R K
Sbjct: 48 EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRS 107
Query: 428 --------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
++V G+ + ++D + +F+++GT+ + L K K R
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 57 DPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE---WRCPLTKQ 532
KIFVGGL+S +DD +R F+S+FG I + R P TK+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR 62
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 117 AENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
AENG GD+ S E ++ RK+FVGGL+ TTD +R+ + +
Sbjct: 8 AENGSGDA----SLEP---ENLRKIFVGGLTSNTTDDLMREFYSQF 46
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 505 RMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
+ E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 142 KSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 194
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 41.1 bits (92), Expect = 9e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
I+S+N+ DP+TG RGFA I F + + +K + H I+ +VD
Sbjct: 51 IQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVD 96
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 508 MEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 654
+ M +D +GF ITF+S+ N ++ I G VDV+ P
Sbjct: 54 VNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDVEPYIP 102
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
+++I ++ DPNT SRGF F+ F + S + M H + K VD K+A R
Sbjct: 76 VDAIVIR-DPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 127
Score = 36.3 bits (80), Expect = 0.026
Identities = 11/28 (39%), Positives = 24/28 (85%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+F+GGLS + +D+++ N+FS++G +++
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVD 77
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
RKLF+GGLS +TTD++L ++F +
Sbjct: 49 RKLFIGGLSHDTTDEQLGNYFSQW 72
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 529 TKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
TK+ R GF F+TF S + +GGK VD KRA P+
Sbjct: 86 TKHSR-GFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 127
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
+++I ++ DPNT SRGF F+ F + S + M H + K VD K+A R
Sbjct: 96 VDAIVIR-DPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 147
Score = 36.3 bits (80), Expect = 0.026
Identities = 11/28 (39%), Positives = 24/28 (85%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+F+GGLS + +D+++ N+FS++G +++
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVD 97
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
RKLF+GGLS +TTD++L ++F +
Sbjct: 69 RKLFIGGLSHDTTDEQLGNYFSQW 92
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 529 TKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
TK+ R GF F+TF S + +GGK VD KRA P+
Sbjct: 106 TKHSR-GFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 147
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
+++I ++ DPNT SRGF F+ F + S + M H + K VD K+A R
Sbjct: 97 VDAIVIR-DPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 148
Score = 36.3 bits (80), Expect = 0.026
Identities = 11/28 (39%), Positives = 24/28 (85%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+F+GGLS + +D+++ N+FS++G +++
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVD 98
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
RKLF+GGLS +TTD++L ++F +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQW 93
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 529 TKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
TK+ R GF F+TF S + +GGK VD KRA P+
Sbjct: 107 TKHSR-GFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 148
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARH----- 421
+ S+N+ D T +GF F+ F E D + + K + KA A
Sbjct: 39 VVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDV 98
Query: 422 -GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
IFVG L E+ + + + FS FG IL+
Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQ 128
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMAAGEHTINNKKVD-----PK 403
F SI EIES + D TG+S G+ F+ + + +++ V + + NK + P
Sbjct: 62 FTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPS 121
Query: 404 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
+ + ++V G+ ++ E+ + F FG I+ R
Sbjct: 122 NDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSR 158
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARH----- 421
+ S+N+ D T +GF F+ F E D + + K + KA A
Sbjct: 49 VVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDV 108
Query: 422 -GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
IFVG L E+ + + + FS FG IL+
Sbjct: 109 GANIFVGNLDPEVDEKLLYDTFSAFGVILQ 138
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 39.5 bits (88), Expect = 0.003
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKVDPKKAKAR 418
S N+ D +T S+G F+ F ++I+ KV+ H + K D + R
Sbjct: 83 SCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNER 142
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERASVSS 562
K+F+G LS + +++ +R F++FG I E L Q K R +S+
Sbjct: 143 --KLFIGQLSKKHNEENLREIFAKFGHI-EDCSVLRDQDGKSRGMLSA 187
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +2
Query: 296 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH-------GKIFVGGLSSE 454
G S+GF F+ + +KV+A +H I+ ++ D K R +IFVG L+ +
Sbjct: 210 GNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQGRPSISRIFVGRLTDK 269
Query: 455 ISDDEIRNFFSE 490
+ + ++R F +
Sbjct: 270 VDEHQLRKVFGD 281
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 305 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
RGFAF+ + E+ +++++ G T+N V A+ R
Sbjct: 302 RGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPR 339
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 526 KTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 642
K+ KGF F+ S N +L P+ I G+ DVK
Sbjct: 207 KSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVK 245
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKVDPKKAKAR 418
S N+ D +T S+G F+ F ++I+ KV+ H + K D + R
Sbjct: 83 SCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNER 142
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K+F+G LS + +++ +R F++FG I
Sbjct: 143 --KLFIGQLSKKHNEENLREIFAKFGHI 168
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKVDPKKAKAR 418
S N+ D +T S+G F+ F ++I+ KV+ H + K D + R
Sbjct: 83 SCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNER 142
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K+F+G LS + +++ +R F++FG I
Sbjct: 143 --KLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKVDPKKAKAR 418
S N+ D +T S+G F+ F ++I+ KV+ H + K D + R
Sbjct: 83 SCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNER 142
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K+F+G LS + +++ +R F++FG I
Sbjct: 143 --KLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKVDPKKAKAR 418
S N+ D +T S+G F+ F ++I+ KV+ H + K D + R
Sbjct: 83 SCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNER 142
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K+F+G LS + +++ +R F++FG I
Sbjct: 143 --KLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKVDPKKAKAR 418
S N+ D +T S+G F+ F ++I+ KV+ H + K D + R
Sbjct: 83 SCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNER 142
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K+F+G LS + +++ +R F++FG I
Sbjct: 143 --KLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKVDPKKAKAR 418
S N+ D +T S+G F+ F ++I+ KV+ H + K D + R
Sbjct: 83 SCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNER 142
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K+F+G LS + +++ +R F++FG I
Sbjct: 143 --KLFIGQLSKKHNEENLREIFAKFGHI 168
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 36.7 bits (81), Expect = 0.019
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +2
Query: 251 IREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA-RHGK 427
I +E++ + D +TG+ +GFAF+ FK S+ +A TI +K D + K + G
Sbjct: 270 IGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS--LALSMETIKMEKRDLRITKVMKKGH 327
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
+ + + + +N G + +++ K+RT E+
Sbjct: 328 LTKIQTAKKRTSHGKKNQNEITGKLHKFKFSTKKERTTEQ 367
Score = 34.7 bits (76), Expect = 0.078
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +2
Query: 317 FIVFKAPESIDKVMAAG-----EHTINNKKVDPKKAK-ARHGKIFVGGLSSEISDDEIRN 478
++ F A ES++K + +H I KV KK + + IFVG L EI++D +
Sbjct: 205 YVKFGAEESVEKALKYNGTKLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALIT 264
Query: 479 FFS 487
FFS
Sbjct: 265 FFS 267
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWR----CPLTKQRTKERASVSSHLN 571
+FVG + +++ +R FS+FGTI R P ++ TK ++ LN
Sbjct: 145 VFVGNMPLTMNEKSVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLN 196
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------DPKKAKARH 421
SI V D T S G+A++ F+ P ++ M ++ K + DP ++
Sbjct: 60 SIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGA 119
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTIL 505
G IF+ L I + I + FS FG IL
Sbjct: 120 GNIFIKNLDKVIDNKSIYDTFSLFGNIL 147
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPE 340
F S I S V TD N GRS+GF F+ F+ PE
Sbjct: 337 FESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 368
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------DPKKAKARH 421
SI V D T S G+A++ F+ P ++ M ++ K + DP ++
Sbjct: 60 SIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGA 119
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTIL 505
G IF+ L I + I + FS FG IL
Sbjct: 120 GNIFIKNLDKVIDNKSIYDTFSLFGNIL 147
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPE 340
F S I S V TD N GRS+GF F+ F+ PE
Sbjct: 337 FESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 368
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 35.1 bits (77), Expect = 0.059
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------DPKKAKARH 421
SI V D + S G+A++ F+ P ++ + I+ + + DP +A +
Sbjct: 85 SIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGN 144
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTIL 505
G IF+ L I + + + FS FG IL
Sbjct: 145 GNIFIKNLDRVIDNKSVYDTFSLFGNIL 172
Score = 31.5 bits (68), Expect = 0.73
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPE 340
F S I S V D N GRS+GF F+ F+ PE
Sbjct: 363 FSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPE 394
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
++V + +++DD +R+ FS FGTI
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTI 369
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 35.1 bits (77), Expect = 0.059
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------DPKKAKARH 421
SI V D + S G+A++ F+ P ++ + I+ + + DP +A +
Sbjct: 85 SIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGN 144
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTIL 505
G IF+ L I + + + FS FG IL
Sbjct: 145 GNIFIKNLDRVIDNKSVYDTFSLFGNIL 172
Score = 31.5 bits (68), Expect = 0.73
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPE 340
F S I S V D N GRS+GF F+ F+ PE
Sbjct: 363 FSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPE 394
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
++V + +++DD +R+ FS FGTI
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTI 369
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI-LEW 511
K+FVGGL S + + +I NFFS +G + ++W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 34.7 bits (76), Expect = 0.078
Identities = 21/78 (26%), Positives = 39/78 (50%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFV 436
E+ +IN+ D +TG+S+GFAF+ +K S ++A N + + + H + +
Sbjct: 63 EVMNINLIRDKDTGKSKGFAFLCYKDQRS--TILAV--DNFNGISLHKRMIRVDHVEEYK 118
Query: 437 GGLSSEISDDEIRNFFSE 490
E +DDE + + E
Sbjct: 119 VPKYKEDADDETKRLWEE 136
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 34.7 bits (76), Expect = 0.078
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 150 NSAEAPGRDDD--RKLFVGGLSWETTDKELRDHFGAYVK 260
N AE P +D R LFVG +++ET++ +LR F AY K
Sbjct: 91 NPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGK 129
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 34.7 bits (76), Expect = 0.078
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 371 HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-LEW 511
HT+ + + K+FVGG+S ++ I FF +FGT+ ++W
Sbjct: 188 HTVVKNHRNENNQRVVSNKVFVGGISHMMNRKIINKFFGQFGTVFVDW 235
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
H +F+GGL ++ +EI FSEFG +L
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVVL 346
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 34.7 bits (76), Expect = 0.078
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 371 HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-LEW 511
HT+ + + K+FVGG+S ++ I FF +FGT+ ++W
Sbjct: 188 HTVVKNHRNENNQRVVSNKVFVGGISHMMNRKIINKFFGQFGTVFVDW 235
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
H +F+GGL ++ +EI FSEFG +L
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVVL 346
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 34.7 bits (76), Expect = 0.078
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
++E +++KT NT + +AF++F+ + + A E + + K +GK
Sbjct: 194 KVEEVDIKTPINTDAA--YAFVMFQTVDQA--IQAKAEEQDRPIRAGGSRMKIGYGKSQV 249
Query: 428 ---IFVGGLSSEISDDEIRNFFSEFGTI 502
+FVGGL S + ++ F EFG +
Sbjct: 250 SRRLFVGGLGSWCDKEILQKAFGEFGFV 277
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILE 508
+FVG + S++ + EIR+ F E G + E
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEE 197
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 34.7 bits (76), Expect = 0.078
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
++E +++KT NT + +AF++F+ + + A E + + K +GK
Sbjct: 194 KVEEVDIKTPINTDAA--YAFVMFQTVDQA--IQAKAEEQDRPIRAGGSRMKIGYGKSQV 249
Query: 428 ---IFVGGLSSEISDDEIRNFFSEFGTI 502
+FVGGL S + ++ F EFG +
Sbjct: 250 SRRLFVGGLGSWCDKEILQKAFGEFGFV 277
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILE 508
+FVG + S++ + EIR+ F E G + E
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEE 197
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 34.7 bits (76), Expect = 0.078
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK--- 427
++E +++KT NT + +AF++F+ + + A E + + K +GK
Sbjct: 171 KVEEVDIKTPINTDAA--YAFVMFQTVDQA--IQAKAEEQDRPIRAGGSRMKIGYGKSQV 226
Query: 428 ---IFVGGLSSEISDDEIRNFFSEFGTI 502
+FVGGL S + ++ F EFG +
Sbjct: 227 SRRLFVGGLGSWCDKEILQKAFGEFGFV 254
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILE 508
+FVG + S++ + EIR+ F E G + E
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEE 174
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 34.7 bits (76), Expect = 0.078
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
RK+FVGG+ W+ T+ L+D FG +
Sbjct: 295 RKIFVGGVPWDITEAALKDSFGEF 318
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGT-ILEW 511
KIFVGG+ +I++ +++ F EFG+ +EW
Sbjct: 296 KIFVGGVPWDITEAALKDSFGEFGSCAVEW 325
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 34.7 bits (76), Expect = 0.078
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 371 HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-LEW 511
HT+ + + K+FVGG+S ++ I FF +FGT+ ++W
Sbjct: 188 HTVVKNHRNENNQRVVSNKVFVGGISHMMNRKIINKFFGQFGTVFVDW 235
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
H +F+GGL ++ +EI FSEFG +L
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVVL 346
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 416 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
RH +FVG LSSE+ + ++R F FG + + + TK +
Sbjct: 20 RHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 63
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWR 514
++VG ++S +++DEIR F+ FG I E R
Sbjct: 130 VYVGNIAS-LTEDEIRQGFASFGRITEVR 157
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 416 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
RH +FVG LSSE+ + ++R F FG + + + TK +
Sbjct: 30 RHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 73
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWR 514
++VG ++S +++DEIR F+ FG I E R
Sbjct: 140 VYVGNIAS-LTEDEIRQGFASFGRITEVR 167
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 416 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
RH +FVG LSSE+ + ++R F FG + + + TK +
Sbjct: 133 RHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 176
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWR 514
++VG ++S +++DEIR F+ FG I E R
Sbjct: 243 VYVGNIAS-LTEDEIRQGFASFGRITEVR 270
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 416 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
RH +FVG LSSE+ + ++R F FG + + + TK +
Sbjct: 101 RHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 144
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWR 514
++VG ++S +++DEIR F+ FG I E R
Sbjct: 211 VYVGNIAS-LTEDEIRQGFASFGRITEVR 238
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
F SI +I ++ + D TGR RGFAFI F S + +
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/46 (26%), Positives = 30/46 (65%)
Frame = +2
Query: 371 HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
H+ + ++ + ++H +FVG LS ++S++ +++ F++FG + E
Sbjct: 118 HSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSE 163
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 177 DDRKLFVGGLSWETTDKELRDHFGAY 254
D+ ++VG +S +TTD +LRD F Y
Sbjct: 235 DNTSVYVGNISQQTTDADLRDLFSTY 260
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 353 VMAAGEHTINNKKVDPKKAKARHG-KIFVGGLSSEISDDEIRNFFSEFGTIL-EWRCPLT 526
+M + + K P A+ + K+F+GGL ++S++++ F FG +L +W P
Sbjct: 221 LMGVSKSCLEASKKRPISAEPLYSRKVFIGGLPIDVSEEQVWATFGAFGKVLIDW--PRR 278
Query: 527 KQRTKERA 550
+ ERA
Sbjct: 279 PEHNAERA 286
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 329 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
K +++ M +++ PK K K+F+G LS + S+DE+R F+ FG + E
Sbjct: 94 KTLPGMNRAMQVKPADTDSRPASPKD-KMDDKKLFIGMLSKQQSEDEVRALFATFGELDE 152
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEW 511
K+FVG + + + ++R+ F +FG I E+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEF 58
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 144 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
D A + DD+KLF+G LS + ++ E+R F +
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATF 147
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 329 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
K +++ M +++ PK K K+F+G LS + S+DE+R F+ FG + E
Sbjct: 94 KTLPGMNRAMQVKPADTDSRPASPKD-KMDDKKLFIGMLSKQQSEDEVRALFATFGELDE 152
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEW 511
K+FVG + + + ++R+ F +FG I E+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEF 58
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 144 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
D A + DD+KLF+G LS + ++ E+R F +
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATF 147
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 401 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
K +RH +FVG L SEI ++R F +FG + E
Sbjct: 125 KPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSE 160
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 371 HTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
H + K D +A A + ++VG +++ + +DEIR F FG I E R
Sbjct: 237 HNQSEKTYDEIFNQAAADNTSVYVGNIAN-LGEDEIRRAFDRFGPINEVR 285
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPE 340
F S I S V TD N GRS+GF F+ F+ PE
Sbjct: 277 FESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 308
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPE 340
F S I S V TD N GRS+GF F+ F+ PE
Sbjct: 274 FESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 305
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 395 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
DP ++ G IF+ L I + I + FS FG IL
Sbjct: 48 DPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNIL 84
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPES 343
I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 128 IKSINMSWDPATGHHKTFAFVEYEVPEA 155
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPES 343
I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 128 IKSINMSWDPATGHHKTFAFVEYEVPEA 155
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPES 343
I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 128 IKSINMSWDPATGHHKTFAFVEYEVPEA 155
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Frame = +2
Query: 305 RGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK-------AKARHGKIFVGGLS 448
RGFA++V + + + + + + + DP+K K+FV +
Sbjct: 632 RGFAYVVMENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKFSTTLEKSKVFVRNVH 691
Query: 449 SEISDDEIRNFFSEFGTILEWR 514
+ +DDE++ FS+FGT+ R
Sbjct: 692 FQATDDELKALFSKFGTVTSVR 713
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 162 APGRDDDRKLFVGGLSWETTDKELR 236
APG +D R +FV L + TT+ E+R
Sbjct: 586 APGTEDARTIFVSNLDFTTTEDEIR 610
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKARHGKIF 433
+I + + DP +G SRG+AF+ + E + H I+ K + ++F
Sbjct: 225 KIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIANTRLF 284
Query: 434 VGGLSSEISDDEI 472
+G + S DEI
Sbjct: 285 IGNIPKTKSKDEI 297
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
H +F+GGL ++ +EI FSEFG +L
Sbjct: 104 HRTVFLGGLPRIVTAEEIAQMFSEFGVVL 132
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTIL 505
+FVG +S ++S+D IR+ FS+ G +L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVL 45
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
PKK ++FVG L +E+ + E++ FS G I E
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
PKK ++FVG L +E+ + E++ FS G I E
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
PKK ++FVG L +E+ + E++ FS G I E
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 365 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
G+HT + + K +FVG +S + SD+ IR +E G + W+
Sbjct: 31 GQHTPAQQS---SQQKPDSSPVFVGNISDKCSDEFIRKILNECGNVASWK 77
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 365 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
G+HT + + K +FVG +S + SD+ IR +E G + W+
Sbjct: 31 GQHTPAQQS---SQQKPDSSPVFVGNISDKCSDEFIRKILNECGNVASWK 77
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGGL SD + +F +FG I E
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEE 63
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 138 SQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHF 245
+Q N+ G D K+FVGGL + T+DK L ++F
Sbjct: 18 AQSTNAEPVVGSRDTMFTKIFVGGLPYHTSDKTLHEYF 55
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 31.9 bits (69), Expect = 0.55
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 153 SAEAPGRDDDRKLFVGGLSWETTDKELRDHF 245
+AE + D R ++VG + W++T E+ +HF
Sbjct: 36 TAEEQEKTDARSVYVGNVDWKSTVSEIEEHF 66
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 394
++ + + D TG + FAF+ F+ ES+ + N+K+
Sbjct: 71 KVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKI 116
>AF039035-2|AAB94162.1| 304|Caenorhabditis elegans Hypothetical
protein C53A3.1 protein.
Length = 304
Score = 31.1 bits (67), Expect = 0.96
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
SFW +N +TDP+T F FI + P+ + KVM T++ +D +
Sbjct: 137 SFWIDELRRLVNFRTDPHT--YYNFNFIPYDEPKQLMKVMTFLNETLS---IDHVEIMMD 191
Query: 419 HGKIF 433
H K+F
Sbjct: 192 HDKLF 196
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVF 328
F ++ + ++ + D TGR RGFAF+ F
Sbjct: 26 FAAVGHVNNVRIVYDRETGRPRGFAFVEF 54
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERASVSSHLN 571
KIF+GGL + +++D+++ FG + + + Q + + + +L+
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLD 340
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
K++VGGL S+ + E+ F FG I
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRI 29
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
K++VGGL S+ + E+ F FG I
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRI 29
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
K++VGGL S+ + E+ F FG I
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRI 29
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
++FVGG TT+ ELR+HF
Sbjct: 67 RIFVGGFPTSTTETELREHF 86
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 538 QRKGFCFITFESEQVVNDLLK-TPKR 612
Q KG+ FITFE+E ++ K TPK+
Sbjct: 104 QSKGYGFITFETEDQAEEIRKLTPKQ 129
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 201 GLSWETTDKELRDHFG 248
GL WE T++ELRD FG
Sbjct: 11 GLPWEATEQELRDFFG 26
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 201 GLSWETTDKELRDHFG 248
GL WE T++ELRD FG
Sbjct: 11 GLPWEATEQELRDFFG 26
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERASVSSHLN 571
KIF+GGL + +++D+++ FG + + + Q + + + +L+
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLD 340
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERASVSSHLN 571
KIF+GGL + +++D+++ FG + + + Q + + + +L+
Sbjct: 267 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLD 315
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERASVSSHLN 571
KIF+GGL + +++D+++ FG + + + Q + + + +L+
Sbjct: 270 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLD 318
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESI 346
F ++ + + + TD TGRS+G ++ F ES+
Sbjct: 45 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 79
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESI 346
F ++ + + + TD TGRS+G ++ F ES+
Sbjct: 190 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 224
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
++FVGG TT+ ELR+HF
Sbjct: 68 RIFVGGFPTSTTETELREHF 87
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 538 QRKGFCFITFESEQVVNDLLK-TPKR 612
Q KG+ FITFE+E ++ K TPK+
Sbjct: 105 QSKGYGFITFETEDQAEEIRKLTPKQ 130
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 63 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 188
N++N + + +N NG NGG + N E+ G D + +
Sbjct: 1323 NSENVNSETSPENGSNGKLANGGDNLSIKNGIESNGNDGEEE 1364
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 63 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 188
N++N + + +N NG NGG + N E+ G D + +
Sbjct: 1323 NSENVNSETSPENGSNGKLANGGDNLSIKNGIESNGNDGEEE 1364
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 111 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G GGG + + + L V LS TT+K+LRD FG +
Sbjct: 52 GGGGGGGGGRGRNQQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEF 99
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -3
Query: 303 DLPVFGSVFTLILSISRMLQNDHGAPYLW--SPSSAHQQ-KVFCR 178
D PV+G +F LS+S ML A ++W +P + ++ K+ CR
Sbjct: 541 DYPVWGHIFGWFLSLSSMLCIPGYAIWIWFKTPGTVQEKIKLLCR 585
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
+I++G L+S +S+ +I +FF +G I
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQI 29
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
+I++G L+S +S+ +I +FF +G I
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQI 29
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
+I++G L+S +S+ +I +FF +G I
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQI 29
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -3
Query: 303 DLPVFGSVFTLILSISRMLQNDHGAPYLW--SPSSAHQQ-KVFCR 178
D PV+G +F LS+S ML A ++W +P + ++ K+ CR
Sbjct: 541 DYPVWGHIFGWFLSLSSMLCIPGYAIWIWFKTPGTVQEKIKLLCR 585
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -3
Query: 303 DLPVFGSVFTLILSISRMLQNDHGAPYLW--SPSSAHQQ-KVFCR 178
D PV+G +F LS+S ML A ++W +P + ++ K+ CR
Sbjct: 541 DYPVWGHIFGWFLSLSSMLCIPGYAIWIWFKTPGTVQEKIKLLCR 585
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPES 343
E+ + V D TG +GFA + F PE+
Sbjct: 304 EVSEVQVVIDKKTGACKGFAIVEFVFPEA 332
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRA 648
D+ KGF ++TFE+EQ +N + G + + V RA
Sbjct: 46 DRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRA 88
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVF 328
+ ++ + D TGR RGFAF+ F
Sbjct: 30 VSNVRIVCDRETGRPRGFAFVEF 52
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 168 GRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G +D+K++VG L + +KE+ D F Y
Sbjct: 4 GGSEDQKVYVGNLPGDVREKEVEDIFHKY 32
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 168 GRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G +D+K++VG L + +KE+ D F Y
Sbjct: 4 GGSEDQKVYVGNLPGDVREKEVEDIFHKY 32
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 105 LNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 245
+N N + SQ + E D + ++VG + + T +E+ HF
Sbjct: 52 MNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHF 98
>Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical
protein B0001.3b protein.
Length = 575
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 84 DITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
D+ N+ N ++ + GGDS + E DDD
Sbjct: 416 DVAPGNRRNNSSSSAGGDSHLRGTVEFSSSDDD 448
>Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical
protein B0001.3a protein.
Length = 591
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 84 DITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 182
D+ N+ N ++ + GGDS + E DDD
Sbjct: 432 DVAPGNRRNNSSSSAGGDSHLRGTVEFSSSDDD 464
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 302 SRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
SRGF IVF A ++++V G H +N+ K K K H
Sbjct: 487 SRGFVEIVFCAITAMEQVKGYGTHLMNHCKDYMIKNKIYH 526
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,728,484
Number of Sequences: 27780
Number of extensions: 349546
Number of successful extensions: 1379
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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