Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30508
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 65 4e-11
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 65 4e-11
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 58 9e-09
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 53 2e-07
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 53 2e-07
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 52 4e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 50 1e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 1e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 39 5e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 44 9e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 44 9e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 41 8e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 41 8e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 41 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 33 0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.001
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 40 0.002
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 40 0.003
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.003
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.003
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 40 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 39 0.003
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 39 0.004
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 39 0.004
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 39 0.004
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 33 0.006
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.006
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 38 0.006
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 38 0.008
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 38 0.008
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 38 0.008
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 38 0.010
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 37 0.014
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 37 0.014
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 37 0.018
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.024
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.031
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 36 0.031
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 36 0.041
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 36 0.041
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.055
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 35 0.072
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 35 0.072
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 34 0.096
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 34 0.096
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 34 0.13
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 34 0.13
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 34 0.13
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 34 0.13
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.13
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.13
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 34 0.13
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.17
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.17
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.17
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.17
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.22
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.22
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.22
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.22
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.29
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 32 0.39
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.39
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.39
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 32 0.39
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 32 0.39
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 32 0.39
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 32 0.39
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 32 0.51
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 32 0.51
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 32 0.51
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.51
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.51
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.51
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 32 0.51
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 31 0.67
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 31 0.67
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 31 0.89
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.89
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 31 0.89
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 31 0.89
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 1.2
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 1.2
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 1.2
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.6
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.6
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 30 1.6
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 30 1.6
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 30 1.6
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 30 1.6
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 1.6
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 30 1.6
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 30 1.6
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 1.6
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.6
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.6
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 1.6
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 2.1
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 30 2.1
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 30 2.1
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 2.1
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 2.1
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 30 2.1
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 30 2.1
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 2.1
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 2.1
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 30 2.1
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 2.1
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 2.1
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 29 2.7
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 29 2.7
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.7
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 29 2.7
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 29 2.7
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 2.7
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 29 3.6
At2g47390.1 68415.m05915 expressed protein 29 3.6
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 29 3.6
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 3.6
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 4.7
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 4.7
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 4.7
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 4.7
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 4.7
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 6.3
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 28 6.3
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 28 6.3
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 28 6.3
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 6.3
At1g62170.1 68414.m07013 serpin family protein / serine protease... 28 6.3
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 28 6.3
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 8.3
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 28 8.3
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 8.3
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 65.3 bits (152), Expect = 4e-11
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 415
F EI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKG 97
Query: 416 RHG---------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
G KIFVGG+ S +++DE+++FF+++G ++E
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVE 137
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVDPKKAKARHGKIFVGGL 445
D T RSRGF F++F + E +D++++ G + + KK +PKK+ R +
Sbjct: 143 DHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHP 202
Query: 446 SSEISDDEIRNFFSEFG 496
S+D ++ +G
Sbjct: 203 RGRSSNDSYASYGGPYG 219
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D+ Q +GF FITF VV+ +++ I GK+V++KR PK
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK 96
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 496 NYLRMEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPK 657
N + ++ D N+ +GF F+ F+SE+VV++LL K + +V++K+A PK
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 129 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G S++ N G K+F+GGL +TT+ HFG Y
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKY 42
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
+K+FVGG+ T+ EL+D F Y
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKY 132
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 413 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
A GKIF+GGL + ++ F ++G I +
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITD 47
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 65.3 bits (152), Expect = 4e-11
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 415
F EI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKG 97
Query: 416 RHG---------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
G KIFVGG+ S +++DE+++FF+++G ++E
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVE 137
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D+ Q +GF FITF VV+ +++ I GK+V++KR PK
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK 96
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAG 367
D T RSRGF F++F + E +D++++ G
Sbjct: 143 DHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 496 NYLRMEMPFDKTKNQRKGFCFITFESEQVVNDLL 597
N + ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 129 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G S++ N G K+F+GGL +TT+ HFG Y
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKY 42
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
+K+FVGG+ T+ EL+D F Y
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKY 132
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 413 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
A GKIF+GGL + ++ F ++G I +
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITD 47
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 57.6 bits (133), Expect = 9e-09
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK------ 403
F E+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRG 144
Query: 404 ------KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
KA ++ KIFVGGL + +DE++N+F +G I+E
Sbjct: 145 DKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIE 185
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/46 (39%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 418
D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+ K+A+ +
Sbjct: 191 DHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +1
Query: 511 EMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPK 657
++ +D + +GF F+TF++E V+ L K +G K+V++KRA PK
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +3
Query: 90 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
GK+FVGG+S E + + N+F +FG +++
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVD 94
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D+ +GF F+TF V +L+ I ++VD+KR P+ D
Sbjct: 100 DRITGNPRGFGFVTFADSAVAEKVLE-EDHVIDDRKVDLKRTLPRGD 145
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F EI + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPRG 120
Query: 422 G---------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGG+ S + DDE + FF +FG + E
Sbjct: 121 SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKE 158
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVDPKKAKAR 418
F E++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V+ KKA+ +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATPK 657
D + + +GF F+T+ESE +V+ LL R + G +V++K+A PK
Sbjct: 164 DHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +3
Query: 81 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG Y
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKY 65
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D+ Q +GF F+T+ VV+ +++ I GK+V++KR P+
Sbjct: 76 DRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPR 119
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
GKIFVGGL+ E + E F ++G I +
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITD 70
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 25/108 (23%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR------- 418
+E++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 33 VEAV-IMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRTVEAKKAVPRDDQQVLK 90
Query: 419 ------------HG------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
HG KIFVGGL S I+++E +N+F +FGTI +
Sbjct: 91 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 143 YDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
KLF+GG+SW+T ++ LRD+F Y
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNY 29
Score = 36.3 bits (80), Expect = 0.024
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
GK+F+GG+S + ++ +R++FS +G ++E
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVE 34
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 25/108 (23%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR------- 418
+E++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 33 VEAV-IMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRTVEAKKAVPRDDQQVLK 90
Query: 419 ------------HG------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
HG KIFVGGL S I+++E +N+F +FGTI +
Sbjct: 91 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 143 YDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
KLF+GG+SW+T ++ LRD+F Y
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNY 29
Score = 36.3 bits (80), Expect = 0.024
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
GK+F+GG+S + ++ +R++FS +G ++E
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVE 34
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 25/108 (23%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR------- 418
+E++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 33 VEAV-IMRDRATGRARGFGFIVFADPCVSERVIM-DKHIIDGRTVEAKKAVPRDDQQVLK 90
Query: 419 ------------HG------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
HG KIFVGGL S I+++E +N+F +FGTI +
Sbjct: 91 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 143 YDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
KLF+GG+SW+T ++ LRD+F Y
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNY 29
Score = 36.3 bits (80), Expect = 0.024
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
GK+F+GG+S + ++ +R++FS +G ++E
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVE 34
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F S E+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 422 G---------------------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGGL+S +++ E + +F++FG I +
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 134
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERA 550
K+F+GG+S E S+D +R++F FG +LE + K R RA
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLE--AVIMKDRATGRA 46
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 139 YDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
KLF+GG+SWET++ LRD+F ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSF 29
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 162 APGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
+PG + +K+FVGGL+ T+ E + +F +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQF 129
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F S E+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 422 G---------------------KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGGL+S +++ E + +F++FG I +
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 134
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERA 550
K+F+GG+S E S+D +R++F FG +LE + K R RA
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLE--AVIMKDRATGRA 46
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 139 YDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
KLF+GG+SWET++ LRD+F ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSF 29
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 162 APGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
+PG + +K+FVGGL+ T+ E + +F +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQF 129
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 25/114 (21%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F + E+ V D TGR RGF F++F P +D+V+ +H+I+ ++VD K+A +R
Sbjct: 26 FTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSRE 84
Query: 422 -------------------------GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGGL ++D+E R +F +G + +
Sbjct: 85 EQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTD 138
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D+ N+ +GF F++F+SE V+ +L + GK+V+VKRA PK
Sbjct: 143 YDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 177 DDRKLFVGGLSWETTDKELRDHFGAY 254
D KLFVGG+SWET + +LR+HF Y
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNY 29
Score = 34.3 bits (75), Expect = 0.096
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTI 502
GK+FVGG+S E +D++R F+ +G +
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEV 32
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
DK + +GF F+ F V++ +L+ K +I +EVDVKRA + +
Sbjct: 40 DKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSREE 85
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 81 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 251
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 252 Y 254
Y
Sbjct: 133 Y 133
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 50.4 bits (115), Expect = 1e-06
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 25/112 (22%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F + E+ + V + TGR RGF F+ F P ID+V+ +H I+N+ VD K+A +R
Sbjct: 26 FSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSRE 84
Query: 422 -------------------------GKIFVGGLSSEISDDEIRNFFSEFGTI 502
KIFVGGL ++ DE R +F +G +
Sbjct: 85 EQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPV 136
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D+T + +GF F++F+SE V+ +L + GK+V+VKRA PK
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK 188
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 275 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
+ D T R RGF F+ F + +S+D V+ H +N K+V+ K+A
Sbjct: 141 IMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 35.5 bits (78), Expect = 0.041
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILE 508
GK+F+GG+S + ++ +R +FS FG +L+
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQ 34
Score = 34.7 bits (76), Expect = 0.072
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 177 DDRKLFVGGLSWETTDKELRDHFGAY 254
D KLF+GG+SW+T + LR++F +
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNF 29
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 502 LRMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
L++ + +K + +GF F+ F V++ +L+ K I ++VDVKRA + +
Sbjct: 33 LQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD-KHHIDNRDVDVKRAMSREE 85
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 409
F S E+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 410 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFGT 499
R KIFVGGL S +++ + + +F +FGT
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGT 133
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FIT++SE+ V +L + GK V+VKRA PK
Sbjct: 141 YDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/44 (36%), Positives = 30/44 (68%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERA 550
+GK+F+GG+S + +++ ++ +FS FG ++E + K RT RA
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIE--AVILKDRTTGRA 46
Score = 37.5 bits (83), Expect = 0.010
Identities = 11/28 (39%), Positives = 23/28 (82%)
Frame = +3
Query: 171 RDDDRKLFVGGLSWETTDKELRDHFGAY 254
+ D+ KLF+GG+SW+T ++ L+++F ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSF 29
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 114 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 245
N N S S PGR RK+FVGGL T+ + + +F
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYF 128
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 409
F S E+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 410 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFGT 499
R KIFVGGL S +++ + + +F +FGT
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGT 133
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FIT++SE+ V +L + GK V+VKRA PK
Sbjct: 141 YDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/44 (36%), Positives = 30/44 (68%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERA 550
+GK+F+GG+S + +++ ++ +FS FG ++E + K RT RA
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIE--AVILKDRTTGRA 46
Score = 37.5 bits (83), Expect = 0.010
Identities = 11/28 (39%), Positives = 23/28 (82%)
Frame = +3
Query: 171 RDDDRKLFVGGLSWETTDKELRDHFGAY 254
+ D+ KLF+GG+SW+T ++ L+++F ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSF 29
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 114 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 245
N N S S PGR RK+FVGGL T+ + + +F
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYF 128
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH----- 421
++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A +
Sbjct: 28 DLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKVATPKEEMRQP 86
Query: 422 ----GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCP 520
+IFV + S +S+ + R+ F +G I + P
Sbjct: 87 AKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/50 (46%), Positives = 27/50 (54%)
Frame = +1
Query: 514 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
MP D Q +G FITF S V DL++ +GG V V RATPK D
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRATPKED 170
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
KIFVG L E S D++R++F FG I + P +R+ R
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHR 281
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D++ + +GF ++TF S + + LK + +G + ++VK ATPK +
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVATPKEE 82
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 514 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 654
+P D ++ +GF F+TF +E V D + I G+EV + ATP
Sbjct: 271 IPKDPKRSGHRGFGFVTF-AENGVADRVARRSHEICGQEVAIDSATP 316
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 147 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
+ E R K+FVG L E + +LRD+FG +
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRF 263
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.9 bits (84), Expect(2) = 1e-05
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 341 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++ +
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 515 CPLTK 529
P+ K
Sbjct: 352 IPVGK 356
Score = 29.1 bits (62), Expect(2) = 1e-05
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVF 328
++S V D NTGRS+G+ F+ F
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRF 251
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 47.2 bits (107), Expect = 1e-05
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE----HTINNKKVDPKKAK----- 412
+E++ + D TGR+RGF FIVF P ++V+ T+ KK P+ +
Sbjct: 42 VEAV-IMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKR 100
Query: 413 ------------------ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
AR KIFVGGL S I++ E +N+F +FGTI +
Sbjct: 101 HASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIAD 150
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
I + V D NT R RGF FI F + ES+D V+ H +N K V+ K+A
Sbjct: 148 IADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FITF+SE+ V+ +L + GK V+VKRA PK
Sbjct: 155 YDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 37.5 bits (83), Expect = 0.010
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
KLF+GG+SW+T ++ L+++FG Y
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKY 38
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +2
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKERA 550
GK+F+GG+S + ++ ++ +F ++G ++E + + RT RA
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVE--AVIMRDRTTGRA 55
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 663
D+T + +GF FI F V ++ K I G+ V+ K+A P+ D
Sbjct: 49 DRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRDD 94
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D N+ +GF F+T++SE V ++++ + K V+VKRA PK
Sbjct: 154 DGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
Score = 36.7 bits (81), Expect = 0.018
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGG++ E S++ ++ +FS +G +LE
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLE 34
Score = 35.5 bits (78), Expect(2) = 5e-05
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 413 ARHGKIFVGGLSSEISDDEIRNFFSEFG 496
+R KIFVGGLSS +++E +++F FG
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFG 144
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +3
Query: 174 DDDR-KLFVGGLSWETTDKELRDHFGAY 254
D DR KLFVGG++ ET+++ L+ +F Y
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRY 29
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHF 245
+K+FVGGLS TT++E + +F
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYF 140
Score = 29.1 bits (62), Expect(2) = 5e-05
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 293 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
TG+ RGF F+ F + K + H I K VD +KA +H
Sbjct: 43 TGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRKH 84
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 44.4 bits (100), Expect = 9e-05
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 397
F ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKE 544
+ + K+FVG L +S+ E+++ FS++GTI + + Q+T +
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSK 146
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 44.4 bits (100), Expect = 9e-05
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 397
F ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKE 544
+ + K+FVG L +S+ E+++ FS++GTI + + Q+T +
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSK 146
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
H K+FVGGL+ E DE+R +F +FG ILE
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILE 45
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
K+FVGGL+WET E+R +F +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQF 40
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
EI + TD TG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 42 EILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKAN 88
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.1 bits (92), Expect = 8e-04
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKKAKARHG 424
+ +N+ + T RG F+ E DKV+ ++ +NKK P + K G
Sbjct: 38 VNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQVKYADG 93
Query: 425 -------KIFVGGLSSEISDDEIRNFFSEFGTI 502
K+FVG L +S+ E+++ FSE+GTI
Sbjct: 94 ELERLEHKLFVGMLPKNVSETEVQSLFSEYGTI 126
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 59 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
+D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 66 YDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 111
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 350 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 61
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 162 APGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
+PG + +K+FVGGL+ T+ E + +F +
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQF 56
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKP 660
+D+ + KGF F+T++S Q V + +K+ + G+++ V A +P
Sbjct: 237 YDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284
Score = 32.7 bits (71), Expect(2) = 0.001
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F S +E + V D TGRSRGF F+ S+ +V AA + N ++D + +
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRPLRVNA 166
Query: 422 G 424
G
Sbjct: 167 G 167
Score = 27.1 bits (57), Expect(2) = 0.001
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
+++VG LS + D + + FSE G ++E R
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT--------INNKKVD 397
F + + S+ V D N RS G+A+I F P + M A +T I D
Sbjct: 69 FKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRD 127
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
P + G IF+ L + I + + FS FGTIL
Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTIL 163
Score = 38.7 bits (86), Expect = 0.004
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE------HTIN 382
+F S I S V D TGRS+G+ F+ F+ ES IDK+ M + H I
Sbjct: 155 TFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 383 NKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
++ D R ++V L EI +DE+R F +FG I
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 394
+F + I S V DP+ G+S+G+ F+ + E+ + +N+K+V
Sbjct: 152 TFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH 210
Query: 395 ----DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 496
DP K + ++V LS +SD+E+ F EFG
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG 248
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 394
+F ++ S+ V D T RS G+ ++ + P+ + + +N + +
Sbjct: 64 AFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVR 123
Query: 395 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
DP K+ G IF+ L I + FS FG IL
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL 160
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 410 KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K++ ++V L ++DD++R F+ FGTI
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTI 353
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQ 532
IFVGGL + ++DDE+++ F +FG +L + P K+
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKR 296
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 141 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAY 254
Q+ A A D ++ +FVGGL TD EL+ FG +
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQF 283
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTK 529
IFVGGL S ++D++++ FSEFG I+ + P+ K
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Score = 31.1 bits (67), Expect = 0.89
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Frame = +2
Query: 254 REIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-----AAGEHTINNKKVD------P 400
REI S+ V + + G S G+ F+ F++ + DKV+ A +T +++
Sbjct: 129 REIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTG 188
Query: 401 KKAKARHG---KIFVGGLSSEISDDEIRNFFSE 490
+K +G IFVG L+ ++SD + FSE
Sbjct: 189 EKRLENNGPDLSIFVGDLAPDVSDALLHETFSE 221
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
+++ V D NTGRS+G+ F+ F K M
Sbjct: 226 VKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQ 532
+FVGGL + ++DD ++N FS++G I+ + P K+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR 297
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQ 532
+FVGGL + ++DD ++N FS++G I+ + P K+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR 297
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 413 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
A+ G +IFVGGLS E++D ++ FS FG IL+ + L + + R
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSR 48
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTINNKKVDP 400
+F +I + + +TGRSRGF FI F ++D+ + G+ I+ + +P
Sbjct: 26 AFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEP 85
Query: 401 K 403
K
Sbjct: 86 K 86
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 502 LRMEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPK 657
L ++ ++ + +GF FITF + +++ ++ R G + + V RA PK
Sbjct: 34 LDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
+F S EIE +V D +TGR +G+ F++FK + + + E + N+ V A +
Sbjct: 427 AFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEK 486
Query: 419 HGK 427
GK
Sbjct: 487 PGK 489
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAY 254
E+ RD R +FV G W+TT + L+ F +Y
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESY 431
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E DE+R +F +FG ILE
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILE 45
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
F EI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET E+R +F
Sbjct: 18 KVFVGGLAWETPTDEMRRYF 37
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E DE+R +F +FG ILE
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILE 45
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
F EI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET E+R +F
Sbjct: 18 KVFVGGLAWETPTDEMRRYF 37
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------D 397
F + ++ S+ V D T S G+ ++ + + +K M ++ N K+ D
Sbjct: 66 FTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRD 125
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
++ G +FV L + + + FS GTI+
Sbjct: 126 SSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIV 161
Score = 29.5 bits (63), Expect(2) = 0.006
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
++V L ++D+++R F+EFGTI
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTI 354
Score = 27.9 bits (59), Expect(2) = 0.006
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 406
+F I S V D + G+SR F F+ F+ PE + + A +N KK D K+
Sbjct: 244 TFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV-------D 397
F + + ++ V D T RS G+A++ F PE + M + + I ++ + D
Sbjct: 65 FNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRD 123
Query: 398 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
P + G +F+ L + I + + FS FGTIL
Sbjct: 124 PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTIL 159
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTK 529
IFVGGL S ++D++++ F+EFG I+ + P+ K
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK 339
Score = 37.9 bits (84), Expect = 0.008
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +2
Query: 254 REIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP----------- 400
REI S+ V + N G S G+ F+ F++ + DKV+ T P
Sbjct: 127 REIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTG 186
Query: 401 KKAKARHG---KIFVGGLSSEISDDEIRNFFSE 490
+K +G IFVG LS ++SD+ + FSE
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
+++ V D NTGRS+G+ F+ F K M
Sbjct: 224 VKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRD---HFGAYVK*RVLM*RQ 284
KLF+GGLSW T D LRD HFG V +V++ R+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE 71
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+F+GGLS D +R+ F+ FG +++ + + ++ + R
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSR 76
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRD---HFGAYVK*RVLM*RQ 284
KLF+GGLSW T D LRD HFG V +V++ R+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE 71
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+F+GGLS D +R+ F+ FG +++ + + ++ + R
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSR 76
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 37.9 bits (84), Expect = 0.008
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +2
Query: 254 REIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP----------- 400
REI S+ V + N G S G+ F+ F++ + DKV+ T P
Sbjct: 127 REIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTG 186
Query: 401 KKAKARHG---KIFVGGLSSEISDDEIRNFFSE 490
+K +G IFVG LS ++SD+ + FSE
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
+++ V D NTGRS+G+ F+ F K M
Sbjct: 224 VKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = +2
Query: 251 IREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 430
I EI + + D ++G S+G+AF+ FK + K + K ++
Sbjct: 139 IGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRL 198
Query: 431 FVGGLSSEISDDEIRNFFSEFGTILE 508
F+G + ++DE R + G +E
Sbjct: 199 FIGNIPKNWTEDEFRKVIEDVGPGVE 224
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 419 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
HG ++F+GGL ++ ++++R+ E G I E R
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVR 146
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +2
Query: 260 IESINVKTDP-NTGRSRGFAFIVF 328
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Frame = +2
Query: 296 GRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---KVDPKKAKARHGKIFVGGL 445
G+SRG+ F+ F+ A ++++ + A + K K D K + ++ +++ L
Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNL 208
Query: 446 SSEISDDEIRNFFSEFGTIL 505
+++S+D +R F+EFG I+
Sbjct: 209 DADVSEDLLREKFAEFGKIV 228
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/97 (18%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 394
+F + + S+ + D ++GRS + + F + + + + +++ N K+
Sbjct: 43 AFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
Query: 395 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
P + G +FV L +++ +++ F +FG I+
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIV 139
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 386 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
+K + +K A+ I+V ++ ++++E+R FS+ GTI
Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI 330
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +2
Query: 362 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTK 529
AG H N D ++ + IFVGGL ++++++++ FS+FG ++ + P+ K
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 36.7 bits (81), Expect = 0.018
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 394
+F EIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 147 AFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIG 206
Query: 395 ----DPKKAKARH-------GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTK 529
+P A A+H KI+V +S++I ++ FFS FG I E L K
Sbjct: 207 PVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDK 262
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
EIE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 252 EIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
RK+FV GL W+T L D F Y
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQY 151
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
K+FVGGL+WET + LR HF Y
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQY 47
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
EI V D NTGRS+G+ F+ F+ PE+ + A I+ ++ +
Sbjct: 49 EILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRAN 95
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E + +R F ++G ILE
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILE 52
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 418
+F E+ + D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 53 AFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
KIFVGG+S + +R FS++G +++ + + ++ + R
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSR 75
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 657
D+ + +GF F+TF S + ++ ++ + + G+ + V AT +
Sbjct: 68 DRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
K+FVGG+S+ T + LR+ F Y
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKY 57
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
K+FVGGL+WET + LR HF Y
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQY 47
Score = 34.7 bits (76), Expect = 0.072
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 275 VKTDPNTGRSRGFAFIVFKAPES 343
V TD NTGRS+G+ F+ F+ PE+
Sbjct: 55 VITDKNTGRSKGYGFVTFRDPEA 77
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E + +R F ++G ILE
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILE 52
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
EI V D T RS+GF F+ F+ ES + HTI+ + V+ K A
Sbjct: 34 EIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 648
D + KGF F+TF + + P TI G+ V+ K A
Sbjct: 43 DGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 35.5 bits (78), Expect = 0.041
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGGL+ E D +R +F +FG I+E
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVE 50
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPES 343
F EI V TD NTGRS+G+ F+ FK E+
Sbjct: 42 FEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET +R +F
Sbjct: 23 KIFVGGLAWETQRDTMRRYF 42
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 35.1 bits (77), Expect = 0.055
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 174 DDDRKLFVGGLSWETTDKELRDHFGAY 254
D + + F+GGL+W T+D+ LRD F Y
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKY 30
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 275 VKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHG 424
V D +GRSRGF FI F +++D+ +AA ++ + + KA+ G
Sbjct: 38 VVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQG 88
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATP 654
DK + +GF FITF+ ++ +++ + + G+ + V +A P
Sbjct: 41 DKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.7 bits (76), Expect = 0.072
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E +RN+F +FG I+E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVE 35
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
+E++ V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 34 VEAV-VITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET LR++F
Sbjct: 8 KVFVGGLAWETHKVSLRNYF 27
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.7 bits (76), Expect = 0.072
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E +RN+F +FG I+E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVE 35
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
+E++ V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 34 VEAV-VITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET LR++F
Sbjct: 8 KVFVGGLAWETHKVSLRNYF 27
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 34.3 bits (75), Expect = 0.096
Identities = 11/41 (26%), Positives = 27/41 (65%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+F+GG++ + +D +R F+++G +++ R L ++ + R
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSR 81
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 364
+F E+ V D TGRSRGF F+ F + E+ + A
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.3 bits (75), Expect = 0.096
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 338 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRC 517
E +++ GE + +K +A G+++VG L I+ E+ F E GT+++ +
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
Query: 518 PLTKQRTKER 547
K + R
Sbjct: 148 VYDKVTDRSR 157
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 290 NTGRSRGFAFIVFKAPESIDKVMA 361
NTGRSRGF FI F++ E++ +A
Sbjct: 255 NTGRSRGFGFISFESAENVQSALA 278
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 174 DDDRKLFVGGLSWETTDKELRDHFG 248
D K++ G L W T + L+D FG
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFG 240
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
+F S E+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAY 254
N+L+G G S + G R KLFVGGLSW T D L+ F ++
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSF 58
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGLS D ++ F+ FG + E
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTE 63
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
+F S E+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAY 254
N+L+G G S + G R KLFVGGLSW T D L+ F ++
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSF 58
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGLS D ++ F+ FG + E
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTE 63
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +3
Query: 135 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR---DHFGAYVK*RVLM 275
DS+D + +E+P +KLF+ GLS+ T++K LR + FG V+ +++M
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIM 315
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +2
Query: 338 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWRC 517
ES++K + + D + + K+F+ GLS S+ +R F FG ++E +
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 313
Query: 518 PLTK 529
+ K
Sbjct: 314 IMDK 317
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+F+GGLS + + +++ FS FG + E R K + R
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSR 82
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
KLF+GGLSW ++ L+D F ++
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSF 64
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVF 328
+F S E+ + + D +GRSRGF F+ F
Sbjct: 60 AFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 180 DRKLFVGGLSWETTDKELRDHFGAYVK 260
+ ++FVGGLSW+ T+++L F Y K
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGK 37
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 544 KGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPK 657
+GF FITF + +D +K R +G K + V +A PK
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
+IFVGGLS ++++ ++ + F +G I E
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITE 40
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKARHG 424
+I + +TGR RGF FI F D + + NK + KA+ + G
Sbjct: 37 KITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVG 93
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 180 DRKLFVGGLSWETTDKELRDHFGAYVK 260
+ ++FVGGLSW+ T+++L F Y K
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGK 37
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 544 KGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPK 657
+GF FITF + +D +K R +G K + V +A PK
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
+IFVGGLS ++++ ++ + F +G I E
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITE 40
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKARHG 424
+I + +TGR RGF FI F D + + NK + KA+ + G
Sbjct: 37 KITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVG 93
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKKAKARHG 424
+ +N+ + T RG F+ E DKV+ ++ +NKK P + K G
Sbjct: 38 VNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQVKYADG 93
Query: 425 ----------------KIFVGGLSSEISDDEIRNFFSEFGTI 502
K+FVG L +S+ E+++ FSE+GTI
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTI 135
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 361
+ V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 395 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
+P++ + GKIFVG L + I E FF +FG I
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPI 191
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 660
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
F EIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 660
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
F EIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 660
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
F EIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPL 523
K++VGG+ + ++DEIR++F G I++ C +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM 194
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
KL+VGG+ +++T+ E+R +F
Sbjct: 162 KLYVGGIPYQSTEDEIRSYF 181
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +3
Query: 174 DDDRKLFVGGLSWETTDKELRDHF 245
D ++++G L+W+TT++++R F
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLF 282
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 427
++ +++ DP T SRGF FI K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 100 KVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 150 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 245
+ AE PG L+V GLS T+++L DHF
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHF 95
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
F + ++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F S ++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 422 GKIFVGGLSSEISDDEIRNFF 484
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 648
FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 200 FDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
RKLF+ GL+ +TT + LR F +Y
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSY 98
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 409
F + ++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F S ++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 422 GKIFVGGLSSEISDDEIRNFF 484
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 648
FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 200 FDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 183 RKLFVGGLSWETTDKELRDHFGAY 254
RKLF+ GL+ +TT + LR F +Y
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSY 98
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/85 (21%), Positives = 37/85 (43%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F + E+ + + +P T +S+G AF+ F E + + + + N K A +
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDN 293
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFG 496
+FVG + + + +R +G
Sbjct: 294 DTLFVGNICKIWTPEALREKLKHYG 318
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 394
EI +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 188 EITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAY 254
E+ RD R +FV GL W+TT + L+ F Y
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVY 186
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 654
DK + KGF F+ F++ + LK P++ + + V A P
Sbjct: 197 DKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARP 240
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 329 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 508
K ++ V A + K + + +F G LS +I+ +I NFF E G +++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 509 WR 514
R
Sbjct: 413 VR 414
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFI 322
E+ ++V TD TG SRGFA+I
Sbjct: 508 EVTRVHVPTDRETGASRGFAYI 529
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.3 bits (70), Expect = 0.39
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHGK--- 427
+E V + +T +SRGF F+ E +K + +N +++ +A R +
Sbjct: 139 VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPER 198
Query: 428 ----------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
I+VG L ++ + FSE G +++ R ++ + R
Sbjct: 199 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSR 248
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 364
++ V +D TGRSRGF F+ ++ +AA
Sbjct: 232 KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
K+FVGGL+W+T + + DHF Y
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKY 40
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 361
+F S ++ V TD ++GRS+GF F+ + E +K A
Sbjct: 53 AFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 388
EIE V D TG+++GF F++FK + + + + I N+
Sbjct: 129 EIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 660
DK + KGF F+ F++ + + LK PK+ I + + A+ P
Sbjct: 138 DKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGP 183
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAY 254
EA RD RK+FV GL WETT + L F Y
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGY 127
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 388
EIE V D TG+++GF F++FK + + + + I N+
Sbjct: 129 EIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 660
DK + KGF F+ F++ + + LK PK+ I + + A+ P
Sbjct: 138 DKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGP 183
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAY 254
EA RD RK+FV GL WETT + L F Y
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGY 127
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 415
+F ++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 416 R 418
R
Sbjct: 87 R 87
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 174 DDDRKLFVGGLSWETTDKELRDHFGAY 254
D + + FVGGL+W T D+ L F Y
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQY 31
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 415
+F ++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 416 R 418
R
Sbjct: 87 R 87
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 174 DDDRKLFVGGLSWETTDKELRDHFGAY 254
D + + FVGGL+W T D+ L F Y
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQY 31
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.9 bits (69), Expect = 0.51
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQ 532
IFVG + +++D++++ F +FG ++ + P K+
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR 314
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 361
++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 471 VQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = +2
Query: 308 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 487
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 488 EFGTILEWRCPLTK 529
+FG ++ + K
Sbjct: 99 QFGNLIHMNMVMDK 112
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
KL+V GLS+ TT+ LRD F
Sbjct: 78 KLYVSGLSFRTTEDTLRDTF 97
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E + ++ F +FG ILE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILE 41
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET + ++ HF
Sbjct: 14 KVFVGGLAWETHKETMKKHF 33
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
F EI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E + ++ F +FG ILE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILE 41
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET + ++ HF
Sbjct: 14 KVFVGGLAWETHKETMKKHF 33
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
F EI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVGGL+ E + ++ F +FG ILE
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILE 41
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVGGL+WET + ++ HF
Sbjct: 14 KVFVGGLAWETHKETMKKHF 33
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
F EI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 31.9 bits (69), Expect = 0.51
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 25/108 (23%)
Frame = +2
Query: 266 SINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH------------TINNK 388
S+ V +P TG SRG ++ A S+D G T N
Sbjct: 136 SVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNP 195
Query: 389 KV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
+V PKK +++H K++VG L D +RN FS+FGTI+ R
Sbjct: 196 EVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVSTR 242
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 174 DDDRKLFVGGLSWETTDKELRDH---FGAYVK*RVL 272
+ K++VG L W T LR+H FG V RVL
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVL 244
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKA 409
++ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 202 KVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVG L+ + D++R +F +FG +++
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVD 40
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHF 245
K+FVG L+W TT +LR +F
Sbjct: 13 KIFVGNLTWRTTADDLRRYF 32
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 364
+F S + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 50 AFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
K+++GGLS + +++ FS F + E R K + R
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSR 72
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 412
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.1 bits (67), Expect = 0.89
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKARHGK--- 427
+E V + T +SRGF F+ + + + + + +N + + KA R +
Sbjct: 176 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER 235
Query: 428 ----------IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
++VG L ++ + + FSE G ++E R ++ + R
Sbjct: 236 APRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSR 285
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 364
++ V D TGRSRGF F+ + +++ ++A
Sbjct: 269 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 31.1 bits (67), Expect = 0.89
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Frame = +2
Query: 263 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 412
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 413 --ARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
K+FVG LS ++ + + F E G ++
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECGDVV 204
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 108 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYVK 260
+G+A GD + ++A D D +LFV L + T++EL +HF + K
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGK 286
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPES 343
EI +N+ D TG+S+GFAF+ ++ S
Sbjct: 61 EIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 248 SIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 364
S + N+ D TG S+G+AF V++ P D AA
Sbjct: 397 SFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVDPKKAK 412
++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K P K
Sbjct: 41 KVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEK 100
Query: 413 ARHGKI 430
G++
Sbjct: 101 ISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVDPKKAK 412
++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K P K
Sbjct: 41 KVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEK 100
Query: 413 ARHGKI 430
G++
Sbjct: 101 ISKGRV 106
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 102 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHF 245
++ AE G SQD + SA D R ++VG + + T +E++ HF
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 123
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
+ FVGGL+W T D++L+ F +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQF 29
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFK 331
+F ++ + D +GRSRGF F+ FK
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
+F ++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
+ FVGGL+W T D++L+ F +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQF 29
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 636
D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
+F ++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
+ FVGGL+W T D++L+ F +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQF 29
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 636
D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
+ FVGGL+ +D++++ FS+FG +++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVID 34
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
+F ++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 186 KLFVGGLSWETTDKELRDHFGAY 254
+ FVGGL+W T D++L+ F +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQF 29
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 636
D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 347 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
DK + G + ++ D K + ++V L+ +DD+++N F E+G I
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 55
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 410 KARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
K + ++V L ISD++++ FS FGT+
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTV 158
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 361
+ S V DPN G S+G F+ F PE + M+
Sbjct: 158 VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVG + +++EIR +F + G +LE
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLE 148
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 430
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 431 FVGGLSSEISDDEIRNFFSEFGTI 502
FVG L+ + ++ E+ F +FG +
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHV 237
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
K+FVG + +++EIR +F + G +LE
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLE 148
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 430
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 431 FVGGLSSEISDDEIRNFFSEFGTI 502
FVG L+ + ++ E+ F +FG +
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHV 237
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Frame = +2
Query: 269 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-------GEHTINNKKVDPKKAKARHGK 427
++ K G+S+GF F+ F +S +A G+ K ++ + A G
Sbjct: 139 LSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGN 198
Query: 428 -----IFVGGLSSEISDDEIRNFFSEFGTI 502
++V L ++DD + FS++GT+
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 358
+ S+ V D GRSRGF F+ F PE+ K M
Sbjct: 228 VSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 132 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G + + + E+P R L+VGGL+ ++++RD F A+
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAH 251
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAKAR 418
+ ++ V D T + + FI +++ E D KV+ G+ NK KK+
Sbjct: 51 VVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDV 110
Query: 419 HGKIFVGGLSSEISDDEIRNFFSEFGTI 502
+F+G L ++ + + + FS FG I
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVI 138
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 275 VKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 388
+ DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 365 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 502
GE NN + + + + VG +SS + D E++ F +FG I
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDI 243
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKE 544
+FV G S +S+ ++ FSEFG + + + +RT++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKI-IANERTRQ 97
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKE 544
+FV G S +S+ ++ FSEFG + + + +RT++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKI-IANERTRQ 116
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 159 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
E P + + L+VGGL+ ++++ DHF AY
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAY 248
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKAKARHG 424
I+ + + D T SRGFAF+ F + E K + A T N K + AK+ HG
Sbjct: 484 IKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAKSVHG 541
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 373
+ + V + N+G SRGFAFI F ++ +M EH
Sbjct: 324 LHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESID 349
F S +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 660
+D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 282 YDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 329
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Frame = +3
Query: 111 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF---GAYVK* 263
G+ +GGG S S G +L+VG LSW D L + F G V+
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 264 RVL 272
RV+
Sbjct: 279 RVI 281
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 418
D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 283 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESID 349
F S +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 520 FDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 660
+D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 290 YDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Frame = +3
Query: 111 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHF---GAYVK* 263
G+ +GGG S S G +L+VG LSW D L + F G V+
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 264 RVL 272
RV+
Sbjct: 287 RVI 289
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 284 DPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 418
D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 291 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWR 514
++VGG+ +S D++ FS+FG I ++R
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFR 280
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 108 NGNAENGG--GDSQDHNSAEAPGRDDDR 185
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFK 331
SF + V D TGRSRGF F+ F+
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 395 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 505
DP + G +FV L I + ++ + FS FG +L
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVL 58
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 132 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 254
G + + + E+P + + L+VGGL+ ++++RD F A+
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAH 251
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 427
++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 677 VDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 260 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 427
++SI + +TG+ RG A+ F E + +A KK+ ++ + GK
Sbjct: 677 VDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKKGK 732
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 66 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 185
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 63 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 155
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESI 346
E+ + D TGRS+GF F+ FK +S+
Sbjct: 69 EVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 431 FVGGLSSEISDDEIRNFFSEFGTIL 505
+VG L S+ +++++N FS+FG ++
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVI 35
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE--VDVKRAT 651
D T + KGF F FES E ++ + +RTI G+E V+V +AT
Sbjct: 237 DPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQAT 282
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
+++VG LS +DD +R FS +G +++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVD 31
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 108 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 239
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 502 LRMEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEV 633
L++++ DK + + KGF ++TF S E+ LL+ + + G+ V
Sbjct: 48 LKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVF 328
F S EI++++V D +TG S+G A++ F
Sbjct: 425 FSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 520 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 660
F +T+ G C F+ FE V + +K +GG++V ++ P P
Sbjct: 289 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNP 337
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 520 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 660
F +T+ G C F+ FE V + +K +GG++V ++ P P
Sbjct: 348 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNP 396
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVF 328
F + +E + + DP TG+ +GF FI F
Sbjct: 285 FEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTI 502
+++VG L +S+D++R F FG++
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV 311
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 257 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 394
++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 70 KVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 150 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHF 245
+ AE PG L+V GLS T+++L DHF
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHF 65
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 523 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 648
D+ + KGF FITFESE LK + + G+ + V+ A
Sbjct: 100 DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTI 502
+FV G S +S+ ++ FSEFG +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQV 84
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 428 IFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
+++G + + EI FFS+FGT+ R K+ K +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFK 331
SF V D TGRSRGF F+ F+
Sbjct: 163 SFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILEWR 514
KIF+GG S IS + + S FG + +R
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYR 70
>At1g62170.1 68414.m07013 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
GI:9937311 from [Cucurbita maxima]; contains Pfam
profile PF00079: Serpin (serine protease inhibitor)
Length = 433
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 383 NKKVDPKKAKARHGKIFVGGLS-SEISDDEIRNFFSEFGTILEWRCPLTKQRTKERASVS 559
+KK PK A +G LS + +S D +NFFS +++R + RT+ A S
Sbjct: 150 SKKGGPKIAVV-NGMWMDQSLSVNPLSKDLFKNFFSAAFAQVDFRSKAEEVRTEVNAWAS 208
Query: 560 SHLN 571
SH N
Sbjct: 209 SHTN 212
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 239 SFWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 397
+F S +I V D +G SRGF F+ + + E + M A + NK++D
Sbjct: 55 AFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKELD 103
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 425 KIFVGGLSSEISDDEIRNFFSEFGTILE 508
KIFVGGLS + ++ F FG I++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVD 64
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 93 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 242
T NG GGG + + P R + ++ V GL + ++L+DH
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDH 138
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 93 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 242
T NG GGG + + P R + ++ V GL + ++L+DH
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDH 138
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 93 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 242
T NG GGG + + P R + ++ V GL + ++L+DH
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDH 138
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 60 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 191
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 449 SEISDDEIRNFFSEFGTILEWRCPLTKQR 535
S +D+++ N+F FG + + R P ++R
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPYQQKR 356
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/102 (21%), Positives = 44/102 (43%)
Frame = +2
Query: 242 FWSIREIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 421
F + ++ + V D +T +SRG AF+++ + E K + + I N + A +
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIAADN 136
Query: 422 GKIFVGGLSSEISDDEIRNFFSEFGTILEWRCPLTKQRTKER 547
G+ + + D+ R + L + CP + +ER
Sbjct: 137 GRA-SEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRER 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,992
Number of Sequences: 28952
Number of extensions: 334854
Number of successful extensions: 1691
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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