Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30506
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 30 0.47
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 29 0.83
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 1.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.3
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 27 4.4
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 4.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.4
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 4.4
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 4.4
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 27 4.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.8
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 26 5.8
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 5.8
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 26 5.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.7
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 7.7
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +1
Query: 625 PVDNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKK 792
P+ V +V K+ PE+E + +++N D+A + ++E DDE ++ +KK + K
Sbjct: 205 PIQLVVTREVEKE-VPEEEETEEVKNEEDDKAPK---IEEVDDESEKKEKKTKKVK 256
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 29.1 bits (62), Expect = 0.83
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +1
Query: 616 TPVPVDNEVQEDVAKQG----SPEKEASPD---LQNLVGDEAKEKSPVKETDDEPKRYQK 774
TP+ + +Q D K+ S K S L+N + D AKEK P+ +DDE ++
Sbjct: 1061 TPIHENQSIQSDQIKEVGEVLSAIKSLSDSVMLLKNQIDDLAKEKLPLSSSDDEKVNIKE 1120
Query: 775 K 777
K
Sbjct: 1121 K 1121
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.9 bits (59), Expect = 1.9
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Frame = +1
Query: 529 IETSEKVKETSPVKENSPXXXXXXXXXXATPVP--VDNEVQEDVAKQGSPEKEASPDLQN 702
+E E ++ T+PVKE TP ++ E++A + S E+ L+
Sbjct: 156 VEEKETIEPTTPVKEVETTAHAEEEKGPLTPDSEYAARQLTEELANKSSQEEGVDKQLRV 215
Query: 703 LVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSSREQSE 840
+ EA EK ++ ++E K V + DQ V +E SE
Sbjct: 216 V---EATEKEHEEDGNEENVTVTKPV-EVATDQVESKEVKKKEVSE 257
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +1
Query: 625 PVDNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
P+ +E+ E A++ KE + + + L AKE+ +K+ +++ ++ ++K LQK+R
Sbjct: 700 PMVSELSERAAQERE-RKEQAKEAKRLK-KLAKEEKRLKKKEEKARKAEEKRLQKER 754
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 625 PVDNEVQEDVA--KQGSPEKEASPDL-QNLVGDEAKEKSPVKETDDEPKRYQ 771
PV+N V VA K G P K ASP + Q A+++ P + P+ Q
Sbjct: 352 PVNNVVDASVATQKDGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQ 403
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 4.4
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 505 SKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEV--QEDVAKQGSPEK 678
SK + D + E V T P +E +P + P P + V EDV K+ S EK
Sbjct: 467 SKKRDEDNHQKEETV--TQPKREKTPVEK-------SFPKPASSPVTFSEDVKKEPSEEK 517
Query: 679 EASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRD 798
+ V DEA + +P+ E+ ++ V + K+D
Sbjct: 518 KLE------VSDEAPKAAPLAESKKVEEKEPFYVSKDKKD 551
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 628 VDNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDD 753
V+++V E+ KQ E+ S L + E+ KSP +++DD
Sbjct: 958 VNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDD 999
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 619 PVPVDNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
P +NEV E Q S KEA P+ +E KE+ +E D++ ++KK+
Sbjct: 148 PKSAENEVLEGETTQHSNNKEAHPNT-----EENKEQEDNEEDDEDDGWITPSNIRKKK 201
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 4.4
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Frame = +1
Query: 499 GKSKNDEADTIETSEKVK-----ETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAK- 660
GK +D +DT E SEK + + ++E S + +V+E K
Sbjct: 387 GKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKI 446
Query: 661 ----QGSPEKEA-SPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSS 825
G E + + + ++ ++ EK+ KET+D+ + + K K + V
Sbjct: 447 TNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDD 506
Query: 826 REQ 834
+E+
Sbjct: 507 KEE 509
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 676 KEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
+E PD+ + +E S K DD +R Q+ V ++KR
Sbjct: 789 EEDLPDVNISISSRNEEASKTKPFDDRQQRLQQLVEKRKR 828
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 712 DEAKEKSPVKETDDEPKRYQKKVLQKK 792
DEA +KS V ET+ KR+ VLQ+K
Sbjct: 27 DEA-QKSEVDETEKSIKRFPLSVLQRK 52
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 677 RKPHQIYKIWLEMKQKKNLQ*KRLTMSQKDIKRKF 781
R H+I+++ L + + + + LT+ +KD KR F
Sbjct: 37 RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLF 71
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 308 NDEEYCGDYDQFDLANEVDTLEQFLKL 388
N E YD +D ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 677 RKPHQIYKIWLEMKQKKNLQ*KRLTMSQKDIKRKF 781
R H+I+++ L + + + + LT+ +KD KR F
Sbjct: 37 RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLF 71
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 9 YFSDLIVFREDICHFTILKNTLSNMVVKIYISGIS 113
YF+DLI+F D + I+ NT+ + V++ ++ GIS
Sbjct: 746 YFTDLILFFLDTYLWYIIFNTIFS-VLRSFVLGIS 779
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 673 EKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSSREQ 834
EKE PD GDE + + + + PK Q ++LQK+R + ++ S +E+
Sbjct: 1714 EKEIIPDTCRF-GDEFTHRC-LMPSRENPKAVQYELLQKRRKELEEFMSSEQER 1765
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 7.7
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 655 AKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSSREQ 834
+K E D+++ D+ K+K KE DD PK+ +K +KK ++ K ++S +
Sbjct: 158 SKDDGSEALDDGDIESSEKDKKKKKKS-KENDDAPKKDRK--TRKKEEKARK--LASMLE 212
Query: 835 SEGK 846
SE K
Sbjct: 213 SENK 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,178
Number of Sequences: 5004
Number of extensions: 50474
Number of successful extensions: 200
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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