Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30506
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 37 0.023
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 33 0.22
08_02_1454 - 27222004-27222296,27222389-27222500 31 0.87
07_01_0463 + 3502708-3503535 30 2.7
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 30 2.7
03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666... 29 4.7
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 29 6.2
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 36.7 bits (81), Expect = 0.023
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = +1
Query: 496 SGKSKNDEADTIETSEKVKETS---PVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQG 666
+ + K D++D+ E+ ++ P K +P + ED A +G
Sbjct: 168 TAQKKKDDSDSSESESDESDSDEDVPTKSKAPAVAAKNDDSTDGSESESDSEDEDAAPKG 227
Query: 667 SPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ 801
+ +KE+S D + D++ E+S +DDEPK+ Q+K Q++ +
Sbjct: 228 AAKKESSSDEE----DDSSEES----SDDEPKQPQQKKAQEESSE 264
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 87 VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQNN-AKSSVA 260
+K++ISG+ NKE + V + + N++ + ++ PG+ SD+D AK VA
Sbjct: 361 MKLFISGVVHNKEDAGAKSYVRVPAEINNLEKDSFELYIPGKGSDRDLADTKAAKQKVA 419
>08_02_1454 - 27222004-27222296,27222389-27222500
Length = 134
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 257 GTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEV-DTLEQF 379
G P R LPPQ ++ + CGD+ DL +EV + L+QF
Sbjct: 17 GVAKKPISRKKLPPQNCSESQDCGDH---DLGDEVEEQLQQF 55
>07_01_0463 + 3502708-3503535
Length = 275
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +1
Query: 646 EDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ 801
+D AK K++ D +N D+ ++ + D+E K+ +K++ +KK+D+
Sbjct: 67 DDGAKSAVKSKDSKKDKENKKSDKKDDEHD--DEDEEGKKKEKEMKEKKKDK 116
>02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 613 ATPVPVDNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKK 792
ATP ++ + +A++ KE LQNL+ + + + E ++ K ++K+ +KK
Sbjct: 1138 ATPYSSKSDNENKLAEENQKLKEM---LQNLLASGSDQMGVITELSEKVKTLERKLARKK 1194
Query: 793 RDQ*MKWHVS 822
R + M W S
Sbjct: 1195 RPKDM-WQGS 1203
>03_05_0997 +
29565311-29565664,29566134-29566298,29566572-29566661,
29566763-29566891,29568141-29568272,29568904-29568969,
29569326-29569505,29569664-29569693,29569744-29569839,
29569959-29570096,29571060-29571142,29571447-29571484,
29571568-29571788,29572491-29572538
Length = 589
Score = 29.1 bits (62), Expect = 4.7
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = +1
Query: 502 KSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKE 681
K K +A T + E E + E P + V+ + +G E E
Sbjct: 3 KRKQRKAATEQEVENHDEATVAAEAGPENDGHTAHAAEEAAAAEEGVEREGGGEGGAEGE 62
Query: 682 ASPDLQNLVGDEAKEKSPVKETDDE--PKRYQKKVLQKK 792
PD G+E KE+ + + DE K+ L+KK
Sbjct: 63 EGPDAAARGGEEGKEEEEREVSFDELGLDEQLKRALRKK 101
>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 655 AKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSSR 828
A G ++ A+ L+NL K P +DEP+ + +L++ +D + H SS+
Sbjct: 867 AGSGEVQRLAAVGLENLSYHSIKLSRPPPPPEDEPRPKKMTILKRLKDARVHNHSSSK 924
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,087
Number of Sequences: 37544
Number of extensions: 311155
Number of successful extensions: 946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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