Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30506
(847 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_39966| Best HMM Match : CRA_rpt (HMM E-Value=8.6) 33 0.39
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 33 0.39
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.67
SB_2978| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 30 2.7
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 30 2.7
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066) 30 2.7
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 29 3.6
SB_2996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8) 29 6.3
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 29 6.3
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044) 29 6.3
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 29 6.3
SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7) 29 6.3
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 28 8.3
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7) 28 8.3
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 28 8.3
>SB_42854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = +2
Query: 275 NPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 388
N + LPPQ+FN E+YCG YD+ ANE TLE+FLKL
Sbjct: 58 NDETALPPQIFNGEQYCGGYDELFNANEDGTLEEFLKL 95
Score = 35.1 bits (77), Expect = 0.072
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 87 VKIYISGISGNKEVKKRQQRVLMILDS-KNIKYEVIDITEPGRESDKDFMQNNAKSSVAP 263
+ +YIS S N ++KK+Q + M+L S +I+ EV+DI+ DK N ++++ P
Sbjct: 6 ITVYISRQSANNQMKKQQNWIDMVLKSVTDIEVEVVDISVDPELKDKMRALMNDETALPP 65
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Frame = +1
Query: 529 IETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVA----KQGSPEKEASPDL 696
+E E+V + +PV + P ++VQE+V + GSP+ + D+
Sbjct: 336 VEPKEQVSQDTPVHDKPDSVDRNTFANADKPSNQPSQVQEEVPTSRDQSGSPDNDHPTDV 395
Query: 697 QNLVGD----EAKEKSPVKETDDEPKRYQKKVLQKKRD 798
GD K +SP K ++ K Q+ Q K+D
Sbjct: 396 DKPAGDPEDERPKNQSPEKGMEEPVKSDQEGSYQDKQD 433
>SB_39966| Best HMM Match : CRA_rpt (HMM E-Value=8.6)
Length = 159
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +1
Query: 517 EADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPDL 696
EA+T + +EK K+ KE T + E QE+ K+G EKE +
Sbjct: 64 EAETEKEAEKEKKKKTEKEEEKGKQEETGKEAETEKQAETEKQEETEKEGGTEKEGETEK 123
Query: 697 QNLVGDEAK 723
+ EA+
Sbjct: 124 EGETEKEAE 132
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/72 (20%), Positives = 36/72 (50%)
Frame = +1
Query: 631 DNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MK 810
+ E + + K+G EKEA + ++ +EK K+T+ E ++++++ +K+ + +
Sbjct: 6 ETEKEGETEKEGETEKEAETK-KEAETEKEEEKETKKKTEKEEEKWKQEETEKEAETEKE 64
Query: 811 WHVSSREQSEGK 846
+ E K
Sbjct: 65 AETEKEAEKEKK 76
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 32.7 bits (71), Expect = 0.39
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 239 QC*IFCGTVSDPNPRSPLPPQMFNDEE 319
+C + CGT++DPNP+ P P +++
Sbjct: 1306 RCALTCGTITDPNPKDPYIPDKLPEDD 1332
>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2022
Score = 31.9 bits (69), Expect = 0.67
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 755 SSSVSFTGDFSFASSPTKFCRSGEASFSGEP 663
SSSV F+G+ S+ SS +F S +A +G+P
Sbjct: 1168 SSSVEFSGELSYKSSTKEFIFSNDAVLTGKP 1198
>SB_2978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/97 (29%), Positives = 44/97 (45%)
Frame = +1
Query: 502 KSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKE 681
+ KNDE T + S K PVK++S D E+ AK P+++
Sbjct: 36 EGKNDEKPTEQKSGNEK---PVKKSSDEEKPTEQKSD------DERPVEEPAKDEKPQEK 86
Query: 682 ASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKK 792
AS D + L+ + +K+PVKE E +K+ KK
Sbjct: 87 AS-DNKKLLVHKPDDKTPVKEMTVETTHNEKQKDDKK 122
>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/104 (25%), Positives = 47/104 (45%)
Frame = +1
Query: 499 GKSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEK 678
G+S E T EK +E P KE+ + + + QE+ AK+ +PE+
Sbjct: 625 GRSTEGEGRRERTEEKQEEKVPEKEDK-----------TEELDEEKKRQEENAKEATPER 673
Query: 679 EASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MK 810
+ P+++ G E + DDEP +K +K+++ +K
Sbjct: 674 KPEPEMKPPQGKEFE-----IYLDDEPDLVEKLKAKKEQEDRLK 712
>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 556 TSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSP 735
TSPV ++S TPV +E +E+ K ++E+ P+ + ++ KE+
Sbjct: 110 TSPVSDSSCYLPVLYSKETQTPVVDKDEKEEEEVKPKPIQQESQPETEEKT-EQHKEEEV 168
Query: 736 VKETDDEPK 762
V E +E K
Sbjct: 169 VIELSEEQK 177
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 30.3 bits (65), Expect = 2.1
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Frame = +1
Query: 502 KSKNDEADTIETSEKVKETSPVKEN--SPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPE 675
K DE D IE + +E KE S + E +ED S
Sbjct: 1038 KKMKDEQDEIERKKAEEEEKKRKEEEESKKKDEKEKEEEDEDEEEEEEKKEDAKTDDSET 1097
Query: 676 KEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ 801
KEA P+ + E+KE P E+ +E K + + RD+
Sbjct: 1098 KEAEPESKE-AEPESKEAEP--ESKEETKSEDETTEESSRDE 1136
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/96 (22%), Positives = 41/96 (42%)
Frame = +1
Query: 514 DEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPD 693
+E E EK +E + E P PV+ E +++ A P+KE D
Sbjct: 237 EETRQEEPDEKEREQEELVEEEPKKEEPVEEETKQEEPVEEEPKQEEAVDEEPKKEEQVD 296
Query: 694 LQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ 801
+ +E E+ +E +EPK+ + + K+++
Sbjct: 297 GEP-KQEEQVEELKQEEQIEEPKQEEPVEEEPKQEK 331
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +1
Query: 625 PVDNEV-QEDVAKQGSPEKEA---SPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKK 792
PV+ E QE+ ++G +KE P + V +E K++ PV+E EPK+ + + K
Sbjct: 10 PVEEESKQEEPIEEGPKQKELVEEEPKQEEQVEEEPKQEEPVEE---EPKQEEPVKEEPK 66
Query: 793 RDQ*MKWHVSSREQSEGK 846
+++ ++ E E K
Sbjct: 67 QEEPVEEEPKQEEPVEQK 84
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/92 (25%), Positives = 41/92 (44%)
Frame = +1
Query: 568 KENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKET 747
K+ P +P P +N V + SP ASP N + +K+P
Sbjct: 121 KQTPPPPTPEVIETAPSPSPGENGEVNHVPPE-SPVPPASPQSTNSL----PKKTPAVPE 175
Query: 748 DDEPKRYQKKVLQKKRDQ*MKWHVSSREQSEG 843
DD+ R ++KV+ K + + +++ E++EG
Sbjct: 176 DDDFTREERKVVLHKGNTGLGFNIVGGEENEG 207
>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
Length = 443
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 631 DNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ 801
+NE +ED K + K D + K+K + ++EP+R + + KRD+
Sbjct: 210 ENEKKEDKRKDSAKSKGKDGDRKKREDSGKKDKDKENDKENEPRRKDRSRDKDKRDK 266
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = +1
Query: 532 ETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPDLQNLVG 711
+ E E +EN + P+ +ED K+ S E+E P L+
Sbjct: 153 DAPEAFDEEEKPEENDMGGTEEENPDVPSDEPLTGGTEEDDEKEASEEEEGKPSLE---- 208
Query: 712 DEAKEKSPVKETDDEPKRYQK 774
D ++ +T +EPK +K
Sbjct: 209 DGTEDTPEANKTPEEPKEDEK 229
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/94 (26%), Positives = 38/94 (40%)
Frame = +1
Query: 517 EADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPDL 696
E T +T E K KE+ V E E ++ SP++E +P
Sbjct: 208 EDGTEDTPEANKTPEEPKEDEKVTEEETPKEETPKVEDAPEEVEAPKEEESPKEEDTPKE 267
Query: 697 QNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRD 798
+ D KE +P +E +EPK K+ +K D
Sbjct: 268 E----DAPKEDTPKEEAKEEPKEDTKEEPKKIED 297
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 631 DNEVQEDVAKQGSPEKEASPDLQNLVGDEAKE-----KSPVKETDDEPKRYQKKVLQKK 792
DN+ +++ + G P KE + L D+A E K P +E+ DEP + ++ K
Sbjct: 557 DNDKVDEIIENGPPSKEEKSKSRKLSLDDADEHQAAPKRPRRESRDEPPQSTSSDVEMK 615
>SB_2996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 664 GSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MK 810
GSP+++ S DL N DE + P K ++E + +++ + R++ +K
Sbjct: 12 GSPDEKLSTDLLNQEYDEPTPERPTKFLEEELAKRKQEKQDRMREEKLK 60
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 664 GSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKK 792
GSP + P ++ + D++K+ SPV D+ + +K + +K
Sbjct: 132 GSPVESPPPSKKSRIEDDSKDSSPVPAPDEFRGKLEKVTIVRK 174
>SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 283 TRVRVTDGATEDLALFCMKSLSDSLPGSVM-SMTSYFIFFESKIIRTRC*RFFTS 122
T+ R+T+ T + S P S++ S S FIF E IIR C R S
Sbjct: 17 TKSRMTNARTHSTSASIQGDASPLTPASIITSNRSLFIFSEKNIIRRFCKRIVES 71
>SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)
Length = 302
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 643 QEDVAKQGSPEKEASPDLQNLVGDEAKEKSP--VKETDDEPKRY 768
+++ +Q SP+ + SPD++ D KSP + + D P RY
Sbjct: 216 EQEHKEQKSPDVKRSPDVRRTPDDARAHKSPDVPRRSPDVPNRY 259
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 263 VSDPNPRSPLPPQMFNDEEYCGDYDQF 343
++D P P+PP +F+D++ D D F
Sbjct: 494 LTDEPPSKPIPPPLFDDDDEDDDIDWF 520
>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 387
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 616 TPVPVDNEVQEDVAKQG-SPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKK 792
+P + +++ D G S EAS L N D+ E + T D P + K++LQK
Sbjct: 85 SPEYIFTQIKPDSGLSGLSSSGEASACLCNCGSDKQCEAHGLGMTSDNPAKSCKEILQKN 144
Query: 793 R 795
R
Sbjct: 145 R 145
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 631 DNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MK 810
+ E+ E AK + E++ L+ +E K K P K D E + KKV + + +K
Sbjct: 91 EGEMAEKKAK--AKERKLQKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKVTSEPKSPKVK 148
>SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7)
Length = 354
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 643 QEDVAKQGSPEKEASPDLQNLVGDEAKEKSP--VKETDDEPKRY 768
+++ +Q SP+ + SPD++ D KSP + + D P RY
Sbjct: 190 EQEHKEQKSPDVKRSPDVRRTPDDARAHKSPDVPRRSPDVPNRY 233
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 646 EDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
+D SP+ A+P +N + A S +E +D+P + + + ++K+
Sbjct: 386 DDKRDSASPKGNAAPPKKNAARESASSSSSEEEPEDKPPKEKAEKEEEKK 435
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Frame = +1
Query: 502 KSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKE 681
+S E + SEK ET KE + + + + + G+ E+E
Sbjct: 538 ESDKQEETAPDESEKETETDDTKETDDTKETEDTKE-TEDIKANERKKSESSSVGNEEEE 596
Query: 682 ASPDLQNLVGDE----AKEKSPVKETDDEPKRYQKKV 780
+S D + DE E S + +DDEP+ +++
Sbjct: 597 SSEDDDDEDDDEEDDDGNESSSEESSDDEPETVAERI 633
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 631 DNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
+N ++ AK P K P N E EK VK D+ + ++KVL+ +R
Sbjct: 364 ENHPEQAEAKVAQPRKIMFPKNPNTDKGEDLEKVKVKSLDEIIRERKQKVLEAQR 418
>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
Length = 241
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +1
Query: 631 DNEVQEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MK 810
D + ++D + G + + D + D+AK K+ E D+ K+ +K +K+D K
Sbjct: 122 DGDDEDDEKESGDGDAGNAKDEASGESDDAKPKTKDAEKKDDKKKVDEKKEDEKKDDDKK 181
Query: 811 WHVSSREQSEGK 846
V +++ + K
Sbjct: 182 --VDEKKEDDKK 191
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +1
Query: 502 KSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKE 681
K K +A E+S + ++S +E P TP ++ ++D + + + +
Sbjct: 200 KGKKTQAKQ-ESSSEEDDSSDEEEEKPKKKADDKVKK-TPAKQESSSEDDSSNEEEEKPK 257
Query: 682 ASPDLQNLVGDEAKEKSPVKET--DDEPKRYQKKVLQKKRDQ*MKWHVSSREQS 837
D++ +E S ++ DDE ++ +KK + K++ K SS + S
Sbjct: 258 KKADVKGKKTPAKQESSSGDDSSDDDEEEKSKKKAVSKEKKTPAKQESSSDDSS 311
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,133
Number of Sequences: 59808
Number of extensions: 351649
Number of successful extensions: 1235
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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