Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30506
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 247 LALFCMKSLSDSLPGSVMSMTSYFIFFESKIIRTRC*RFFTSLL 116
           L LFC+  +   +P + + M +  +F+E  +         TS+L
Sbjct: 284 LHLFCLLDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSIL 327


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 759 WLIVSLFYWRFFFCF 715
           WL  S F+ +FF C+
Sbjct: 416 WLSCSSFFQQFFHCY 430


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  VVKIYISGISGNKEVKK 134
           +V + ISG SGN + K+
Sbjct: 11  IVLVLISGCSGNPDAKR 27


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 65  KYLIKHGCQNLYQW 106
           KY ++ GC+  +QW
Sbjct: 405 KYDVRDGCRTPFQW 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,871
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)