Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30506
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 38 0.006
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 33 0.24
At3g56620.1 68416.m06296 integral membrane family protein / nodu... 31 0.96
At2g14140.1 68415.m01575 hypothetical protein similar to At2g049... 31 1.3
At3g28770.1 68416.m03591 expressed protein 30 2.2
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 29 2.9
At4g25210.1 68417.m03628 expressed protein weak similarity to st... 29 2.9
At3g60380.1 68416.m06753 expressed protein 29 2.9
At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, ... 29 2.9
At3g23740.1 68416.m02985 expressed protein 29 3.9
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 5.1
At5g50840.2 68418.m06299 expressed protein 28 6.8
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 28 6.8
At4g31880.1 68417.m04531 expressed protein 28 6.8
At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) l... 28 6.8
At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) l... 28 6.8
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 28 9.0
At1g56660.1 68414.m06516 expressed protein 28 9.0
At1g03350.1 68414.m00314 BSD domain-containing protein contains ... 28 9.0
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 38.3 bits (85), Expect = 0.006
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Frame = +1
Query: 514 DEADTIETSEKVKE---TSPVKENSPXXXXXXXXXXATPVPVDNEVQE-DVAKQGSPEKE 681
+E D E +E++KE K TP VD E +E + ++ + EKE
Sbjct: 277 NEDDIEEKTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTESKEVESVEETTQEKE 336
Query: 682 --ASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSSREQSEGK 846
+ + V +E KEK VKE DD+ ++ +++ +K + K V E +EGK
Sbjct: 337 EEVKEEGKERVEEEEKEKEKVKE-DDQKEKVEEEEKEKVKGDEEKEKVKEEESAEGK 392
Score = 33.9 bits (74), Expect = 0.14
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 502 KSKNDEADTIETSE-KVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEK 678
K K DE +T E + + KE V+E + V + + +E V + EK
Sbjct: 306 KKKIDENETPEKVDTESKEVESVEETTQEKEEEVKEEGKERVEEEEKEKEKVKEDDQKEK 365
Query: 679 EASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRD 798
+ + + GDE KEK VKE ++ + +K+V++ K++
Sbjct: 366 VEEEEKEKVKGDEEKEK--VKE-EESAEGKKKEVVKGKKE 402
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 505 SKNDEADTIETSEKV-KETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKE 681
+K T ET+ + KET+P KE +P P + + E+V ++ S E+E
Sbjct: 33 TKETAPATKETAPTITKETAPTKETAPATKETAPTRTEEPSLTEQD-PENVEEEESEEEE 91
Query: 682 ASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKV 780
+ + +E E+ +E ++E K ++ V
Sbjct: 92 KEEEEKEEEEEEEGEEEEEEEEEEEEKEEEENV 124
>At3g56620.1 68416.m06296 integral membrane family protein / nodulin
MtN21-related similar to MtN21 GI:2598575 (root nodule
development) from [Medicago truncatula]
Length = 377
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 846 LPFRLFTRAHVPFHSLVPLFLENFLLISFWLIVSLFYWRFFF 721
+P F R+H+ H+L P E++L + +L+++ F W FF
Sbjct: 156 IPLITFLRSHLTGHALSPAG-EDYLKATVFLLIASFSWASFF 196
>At2g14140.1 68415.m01575 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 847
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +1
Query: 643 QEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVS 822
++++ KQG E E + Q G E KE+ V+ DE +K+ + K+ D+ M+
Sbjct: 465 KQEIPKQGDEEMEGEEEKQEEEGKE-KEEEKVEYRGDE--ETEKQEIPKQGDEEMEGE-E 520
Query: 823 SREQSEGK 846
+++ EGK
Sbjct: 521 EKQEEEGK 528
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Frame = +1
Query: 505 SKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVP-VDNEV--QEDVAKQGSPE 675
+K + DTI TS K K K+ V+NE+ QED K+ +
Sbjct: 925 NKEENKDTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKS 984
Query: 676 KEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRD 798
+ + +N E KE + E K Y++K + K +
Sbjct: 985 ENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKSKTKEE 1025
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 658 KQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSSREQS 837
K+ E+EA + + K+ ET +EP + +KK +K ++ + +E+S
Sbjct: 464 KKADDEEEAKTEEPSKKKSNKKKTEAEPETAEEPAKKEKKKKRKHEEEETEMPAKKKEKS 523
Query: 838 EGK 846
E K
Sbjct: 524 EKK 526
>At4g25210.1 68417.m03628 expressed protein weak similarity to
storekeeper protein [Solanum tuberosum] GI:14268476;
contains Pfam profile PF04504: Protein of unknown
function, DUF573
Length = 368
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Frame = +1
Query: 505 SKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGS---PE 675
S+ E+D+ SE + P E+ P P+P + V + + P
Sbjct: 42 SQKPESDSEGESESESSSGPEPESEPAKTIKLKPVGTKPIPETSGSAATVPESSTAKRPL 101
Query: 676 KEASPDL--QNLVGDEAKEKSPVKETDDEPKRYQKKVLQK 789
KEA+P+ + D K P+ T+DE K+ + +K
Sbjct: 102 KEAAPEAIKKQKTSDTEHVKKPI--TNDEVKKISSEDAKK 139
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 667 SPEKEASPDLQNLVGDEAKEKSPVKETDDEPKR 765
SP SP LV ++ + +SP TDD P+R
Sbjct: 346 SPSLSPSPPSPELVPNDTRRRSPELVTDDTPRR 378
>At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase,
putative similar to pathogen-inducible alpha-dioxygenase
[Nicotiana attenuata] GI:12539609; contains Pfam profile
PF03098: Animal haem peroxidase
Length = 639
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 271 VTDGATEDLALFCMKSLSDSLPGSVMSMTSYFIFFESKIIRTRC*RFFTS 122
V DG E+L L + G +S T+++IF R RFFTS
Sbjct: 526 VYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTS 575
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 511 NDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASP 690
N E+D E +++V ++ +E+ VPV+ E + +Q + K P
Sbjct: 259 NSESDN-EGTQEVVTSNVTRESGTSSDENEEPLPCERVPVNLEQSDPDKEQETQIKHVIP 317
Query: 691 DLQNLVGDEAKEKSPV 738
D +N +G E SP+
Sbjct: 318 DTENNLGSEIPLSSPL 333
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +1
Query: 667 SPEKEASPDLQNLV--GDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MKWHVSSREQSE 840
S E SP +++ G++ ++K+ +E +DE K+ ++V +K+R + +W R++ E
Sbjct: 240 SSRHEDSPKRKSVEDNGEKKEKKTREEELEDEQKKLDEEV-EKRRRRVQEWQELKRKKEE 298
Query: 841 GK 846
+
Sbjct: 299 AE 300
>At5g50840.2 68418.m06299 expressed protein
Length = 405
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 673 EKEASPDLQNLVGDEAKEKSPV-KETDDEPKRYQKKVLQKKR 795
EKEASP + + + + + S + KE D + Q++V++ KR
Sbjct: 87 EKEASPPISQTLSEGSTQNSTLSKEMDSLKPKKQQEVVESKR 128
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 646 EDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRDQ*MK 810
E V E++ L D +K V E DD KR+ V +KKR +K
Sbjct: 16 ETVVMAAEEEEQRRRLLAEKREDSKSQKKTVSEEDDSEKRFLSHVPRKKRSSLVK 70
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +1
Query: 502 KSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKE 681
+ K +E+ +++ ++ K++ +E P +P PVD+ V + + K
Sbjct: 360 EEKENESSSVKQADLSKDSDIKEETEPAELLDSKDVLTSP-PVDSSVTAATSSENEKNKS 418
Query: 682 ASPDLQNLVGDEAKEKSPVKETDDEPKRY--QKKVLQKKRD 798
GDE S ++ P++ +K QKK++
Sbjct: 419 VQILPSKTSGDETANVSSPSMAEELPEQSVPKKTANQKKKE 459
>At1g76710.2 68414.m08928 SET domain-containing protein (ASHH1) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 1 (ASHH1)
partial cds GI:15488417
Length = 492
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +1
Query: 496 SGKSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPE 675
S SKN E++T E EK K+ S +TP P++ +V + K + E
Sbjct: 266 SEPSKNGESNTNE--EKEKDISTENHLESTALNIQQQSDSTPTPMEEDVVTETVKTETSE 323
Query: 676 KEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
+ QN D + + + V + + + L KKR
Sbjct: 324 -DMKLLSQNSQEDSSPKTAIVSRVHGNISKIKSESLPKKR 362
>At1g76710.1 68414.m08927 SET domain-containing protein (ASHH1) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 1 (ASHH1)
partial cds GI:15488417
Length = 492
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +1
Query: 496 SGKSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPE 675
S SKN E++T E EK K+ S +TP P++ +V + K + E
Sbjct: 266 SEPSKNGESNTNE--EKEKDISTENHLESTALNIQQQSDSTPTPMEEDVVTETVKTETSE 323
Query: 676 KEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
+ QN D + + + V + + + L KKR
Sbjct: 324 -DMKLLSQNSQEDSSPKTAIVSRVHGNISKIKSESLPKKR 362
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 643 QEDVAKQGSPEKEASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKRD 798
+++ K P E PD ++ GD AKE + + D+EPK+ +KK +K+ D
Sbjct: 26 RDEAKKLKQPAMEEEPDHED--GD-AKENNAL--IDEEPKKKKKKKNKKRGD 72
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/98 (21%), Positives = 40/98 (40%)
Frame = +1
Query: 502 KSKNDEADTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKE 681
K K++ + + K K+ K AT +D+E + + K+
Sbjct: 272 KEKDESTEKEDKKLKGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKKNKD 331
Query: 682 ASPDLQNLVGDEAKEKSPVKETDDEPKRYQKKVLQKKR 795
+ + ++ DE EK + DDE + QKK +K++
Sbjct: 332 KAKKKETVI-DEVCEKETKDKDDDEGETKQKKNKKKEK 368
>At1g03350.1 68414.m00314 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 470
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/78 (23%), Positives = 32/78 (41%)
Frame = +1
Query: 523 DTIETSEKVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPDLQN 702
D +E++ V + S E + D+E +++ + PE+++ D
Sbjct: 296 DEVESTYSVAKVSTQDEVTSADSVTEVSNVGLKTDKDSEEKKETDSEEVPEEKSFVDAAP 355
Query: 703 LVGDEAKEKSPVKETDDE 756
DEA + VK T DE
Sbjct: 356 PASDEAPIQDSVKPTSDE 373
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,976,304
Number of Sequences: 28952
Number of extensions: 260869
Number of successful extensions: 1005
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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