Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30504
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)                    31   0.45 
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_34121| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
          Length = 815

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 2   FFYTNLTVAVSLKTNRMLCLVCLCSDISGFIMYLPA*RQRDV 127
           FF T + + + ++   +    CL  D+ G+++Y P+  +RDV
Sbjct: 650 FFQTMVKMYLGIRCKDITSTTCLLVDVGGYVVYHPSFAKRDV 691


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 141 CSSALTSRWR*AGRYMINPEISLHKQTRHNILFVFKETATVKF 13
           C+S L   W+    ++I PE  LH     N   +F  + T+ F
Sbjct: 464 CTSILNFLWKKLSEFVIEPESKLHFIRFLNCALIFLTSITITF 506


>SB_34121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 KKICAKTAAFATEAMMPHLDDRH 345
           KK C + ++F  E  + HL DRH
Sbjct: 76  KKNCTEVSSFLVELRLAHLSDRH 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,776
Number of Sequences: 59808
Number of extensions: 239038
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)