Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30501
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.0  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   3.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   4.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.0  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    26   5.3  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   5.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   5.3  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.0  

>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 307 VPEGQSISLIHCGPSVFLILSLYW*IPEDMRNELDVN 197
           VP+  + S ++ GP V L  + YW +  D+     VN
Sbjct: 101 VPQNGTASTVYVGPQVLLANTFYWKMVVDVSPAFSVN 137


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 327 CVNPCLVSNPCSENAQCKIVDTMPVKTMVCEC 422
           C +PC   +PC E   CK     P++ + CEC
Sbjct: 742 CQSPCHAGHPCDERIPCK----APLE-VSCEC 768


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -3

Query: 195 YLALSWFLANICIAGRITFGIDT*FIRWTICVSSAANGSASYRWVSNCTDLTATGCTM 22
           Y+ L  F+  IC  G+I+  +DT F  +T+         ++Y  V   T L+++ C++
Sbjct: 721 YIFLGLFIICICEGGKISNPLDTDFSIFTVLFEVV----SAYGTVGLSTGLSSSNCSL 774


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 585 SESQTHRPLESIIRPSAGRQGIHSP*SLILDLRCI*QQFDMACILVMHFLCIQANIHKP 409
           S++Q+ RPLE+  +  +  QG +SP  LI +L        +   L   FL     + KP
Sbjct: 780 SDNQSLRPLENENQSVSSTQGSNSPLELINNLPASDDYSSITKALKTRFLTFSPFLSKP 838


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 100 DTDCPSDKSCINSKCDTPCNADICQEPAQCKVHLHQA 210
           D    S  SC+    +T  N DIC++   CK   HQA
Sbjct: 757 DASLSSADSCLIC-LETYTNGDICRKLQACKHFFHQA 792


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 46  IGTVGNPSIACTPIGCRTDTDCPSDKSCIN 135
           I T+G   + C+ +    D++CPS K   N
Sbjct: 190 IPTMGGTKLVCSDVLLNDDSNCPSKKGINN 219


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 699 ALQASTH*PRMHRELSAQLSSVRQPPATHLSP*IIKPRSESQTH 568
           +L  STH P     LS   +++ +    H SP I+KP  ++  H
Sbjct: 169 SLLPSTHSPHSPAPLSTMQTALMRLRTYHPSPIILKPVEQAVNH 212


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 312  ILFPKGSLYHLYIVVLQFFSFFPCI 238
            ++ PK  LY+  +VVL F S +P I
Sbjct: 939  VMEPKSDLYNNPVVVLDFQSLYPSI 963


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 695 CRHLHIDRECIANYLRNCRQCGSRQQRIY 609
           C H +   EC+ N+L+  + C + +Q++Y
Sbjct: 100 CGHTYC-YECLLNWLKESKSCPTCRQKLY 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,870
Number of Sequences: 5004
Number of extensions: 78871
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)